SCN Proteipedia

Hg_chrom4_TN10mRNA_7583

Organism: Heterodera glycines Gene Locus: chr4:4474823-4479370 Feature type: polypeptide

Protein Sequence

Length: 718

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.729	0.81	1.241	0.528	1.184	1.428	0.713	1.741	1.3	1.223	0.992	1.311	1.702	0.83	1.393	0.696	0.662	0.739	1.5	0.901	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7166	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.984

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KRIR	—	—	—	—	—	—	0.000	—	—	0.147	0.845	0.010	0.407	0.117	0.121	0.114	0.019	0.091	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003809	2.000	1.000	Hsc_gene_10070.t1	Hsc_gene_10070.t1	—	P52709.1 Threonine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]	KAI3421046.1 Threonine--tRNA ligase 1, cytoplasmic [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0004812\|GO:0004829\|GO:0005524\|GO:0005737\|GO:0006418\|GO:0006435\|GO:0043039	GO:0005575_0.806\|GO:0110165_0.801\|GO:0005622_0.740\|GO:0008150_0.715\|GO:0005737_0.683\|GO:0016020_0.604\|GO:0003674_0.574\|GO:0043226_0.574\|GO:0009987_0.564\|GO:0043227_0.534\|GO:0043229_0.523\|GO:0008152_0.501	IPR002314+375-586+\|IPR002320+124-689_130-687_386-414_419-442_522-550_565-578_592-604+\|IPR004095+55-119_59-118+\|IPR004154+599-688+\|IPR006195+319-592+\|IPR012675+57-118+\|IPR012676+59-119+\|IPR012947+227-276_228-276+\|IPR018163+121-298+\|IPR033728+299-597+\|IPR036621+591-702+\|IPR045864+282-590_300-583+\|IPR047246+597-688+	SM00863+227-276+	PF00587+375-586+tRNA_synthetase_class_II_core_domain_(G,_H,_P,_S_and_T)\|PF02824+59-118+TGS_domain\|PF03129+599-688+Anticodon_binding_domain\|PF07973+228-276+Threonyl_and_Alanyl_tRNA_synthetase_second_additional_domain	G3DSA:3.10.20.30:FF:000006+57-118+Threonine--tRNA_ligase,_cytoplasmic\|G3DSA:3.30.930.10:FF:000019+282-590+Threonine--tRNA_ligase\|G3DSA:3.30.980.10:FF:000003+122-280+Threonine--tRNA_ligase,_cytoplasmic\|G3DSA:3.40.50.800:FF:000003+591-701+Threonine--tRNA_ligase_2,_cytoplasmic	PTHR11451+49-693+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	703-718	1.000	1-702	4hwt_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.525	83452.080	7.134	8.500	30.780	14.624	48.747	51.253	16.852	13.928	42.201

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	blue	4583.985	2281.040	2545.026	3373.900	3928.985	3509.242	4245.117	2545.115	4134.634	8543.301	6653.873

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.428	0.516	0.188	-0.148	0.285	-0.569	0.881	—	—	—	—	—

No JSON data available for plots.

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