Hg_chrom4_TN10mRNA_7586
Organism: Heterodera glycines Gene Locus: chr4:4481308-4484835 Feature type: polypeptideProtein Sequence
Length: 745
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.874 | 1.171 | 0.555 | 0.962 | 1.101 | 0.719 | 1.141 | 1.163 | 1.506 | 0.976 | 1.342 | 1.529 | 0.826 | 0.986 | 1.208 | 0.792 | 0.976 | 0.516 | 0.553 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7168
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKIFILAEEQLPKMKFAKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.395
|
0.012
|
0.691
|
0.136
|
0.113
|
0.152
|
0.092
|
0.295
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003810
|
1.000
|
2.000
|
Hsc_gene_10072.t1;Hsc_gene_10072.t2
|
Hsc_gene_10072.t1;Hsc_gene_10072.t2
|
— |
Q6TGS6.2 Tyrosine--tRNA ligase, cytoplasmic [Danio rerio]
|
KAI1724742.1 tRNA synthetases class I (W and y) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004831|GO:0005524|GO:0006418|GO:0006437
|
GO:0008150_0.786|GO:0005575_0.769|GO:0110165_0.762|GO:0009987_0.723|GO:0005622_0.690|GO:0005737_0.640|GO:0016020_0.546|GO:0003674_0.524
|
IPR002305+35-329_419-666+|IPR002307+10-286_48-70_159-174_176-198_209-221+|IPR014729+4-214_407-596+|IPR050489+423-733+
|
— |
PF00579+35-329_419-666+tRNA_synthetases_class_I_(W_and_Y)
|
G3DSA:3.40.50.620:FF:000040+1-214+Tyrosine--tRNA_ligase
|
PTHR46264+423-733+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-745
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
82700.700
|
6.646
|
1.500
|
25.772
|
10.336
|
47.114
|
52.886
|
13.557
|
12.215
|
49.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
paleturquoise
|
1782.289
|
2200.997
|
1889.492
|
2322.496
|
2595.876
|
2616.021
|
3178.494
|
1841.155
|
1047.381
|
770.281
|
889.038
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.450
|
— |
0.407
|
0.129
|
— |
0.291
|
-0.612
|
0.931
|
— | — | — | — | — |
No JSON data available for plots.