Hg_chrom4_TN10mRNA_7587
Organism: Heterodera glycines Gene Locus: chr4:4484972-4486984 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 1.846 | 1.154 | 0.704 | 0.794 | 1.337 | 0.486 | 1.587 | 0.605 | 0.919 | 1.031 | 2.401 | 0.882 | 0.872 | 1.157 | 1.49 | 0.855 | 0.825 | 1.047 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7169
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGRKRRM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.946
|
0.144
|
0.029
|
0.222
|
0.009
|
0.031
|
0.047
|
0.014
|
0.040
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008452
|
1.000
|
1.000
|
Hsc_gene_10073.t1
|
— | — |
O02058.2 Putative 6-pyruvoyl tetrahydrobiopterin synthase [Caenorhabditis elegans]
|
KAI1718081.1 6-pyruvoyl tetrahydropterin synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003874|GO:0006729
|
GO:0003674_0.851|GO:0008150_0.848|GO:0008152_0.709|GO:0009058_0.679|GO:0005488_0.632|GO:0003824_0.575|GO:0005515_0.566|GO:0042558_0.564|GO:0042559_0.564|GO:0003874_0.532|GO:0016829_0.532|GO:0016835_0.532|GO:0016838_0.532|GO:0005575_0.526|GO:0110165_0.526
|
IPR007115+303-440_308-436+|IPR022470+335-345+|IPR038418+298-439+
|
— |
PF01242+308-436+6-pyruvoyl_tetrahydropterin_synthase
|
G3DSA:3.30.479.10:FF:000003+299-439+6-pyruvoyl_tetrahydrobiopterin_synthase
|
PTHR12589+303-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;46-133;201-311
|
3.000
|
4-45;134-200;312-441
|
2g64_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
49489.490
|
8.555
|
13.000
|
26.757
|
9.751
|
55.556
|
44.444
|
15.646
|
11.111
|
54.195
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
668.426
|
863.187
|
618.928
|
535.746
|
683.706
|
648.191
|
1401.418
|
676.745
|
563.731
|
466.095
|
507.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.709
|
-0.825
|
— |
0.320
|
— |
1.123
|
— |
1.193
|
— | — | — | — | — |
No JSON data available for plots.