Hg_chrom4_TN10mRNA_7588
Organism: Heterodera glycines Gene Locus: chr4:4487291-4488445 Feature type: polypeptideProtein Sequence
Length: 73
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.159 | 0.956 | 1.743 | 0.472 | 0.685 | 1.054 | 0.652 | 1.37 | 2.435 | 1.296 | 1.868 | 0.806 | 0.761 | 0.263 | 0.839 | 0.196 | 1.572 | 0.623 | 2.107 | 2.015 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.612
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.128
|
0.006
|
0.573
|
0.171
|
0.159
|
0.071
|
0.002
|
0.085
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008453
|
1.000
|
1.000
|
Hsc_gene_10074.t1
|
Hsc_gene_10074.t1;Hsc_gene_23932.t1
|
— |
P91302.1 Ubiquitin-like protein 5 [Caenorhabditis elegans]
|
KAI3418789.1 Ubiquitin-like 5 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0036211
|
GO:0008150_0.921|GO:0009987_0.854|GO:0005575_0.815|GO:0110165_0.812|GO:0005622_0.733|GO:0043226_0.692|GO:0005737_0.691|GO:0043229_0.682|GO:0016020_0.681|GO:0043227_0.642|GO:0043231_0.642|GO:0008152_0.601|GO:0043170_0.601|GO:0044237_0.597|GO:0065007_0.595|GO:0009058_0.592|GO:0009059_0.588|GO:0044249_0.588|GO:0010467_0.587|GO:0050789_0.578|GO:0050794_0.554|GO:0005634_0.521|GO:0048518_0.502
|
IPR000626+2-73+|IPR029071+1-72+|IPR039732+1-73+
|
— | — |
G3DSA:3.10.20.90:FF:000052+1-73+Ubiquitin-like_protein_5
|
PTHR13042+1-73+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-73
|
1uh6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
8737.090
|
8.846
|
3.000
|
32.877
|
15.068
|
52.055
|
47.945
|
19.178
|
13.699
|
38.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
511.555
|
311.828
|
584.083
|
547.624
|
553.620
|
538.686
|
464.249
|
535.225
|
700.749
|
386.750
|
521.321
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
0.676
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.