Hg_chrom4_TN10mRNA_7589
Organism: Heterodera glycines Gene Locus: chr4:4489042-4492326 Feature type: polypeptideProtein Sequence
Length: 607
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.456 | 0.689 | 0.852 | 1.263 | 1.141 | 0.451 | 1.071 | 1.428 | 1.247 | 1.348 | 1.357 | 1.556 | 0.697 | 1.042 | 1.224 | 0.891 | 0.824 | 1.141 | 0.581 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7171
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKVDQVRTIMYHSLKRRFF,RRSGRAEKARAEKTSRRNTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.645
|
0.207
|
0.036
|
0.447
|
0.151
|
0.088
|
0.122
|
0.170
|
0.111
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001801
|
3.000
|
1.000
|
Hsc_gene_9221.t3
|
Hsc_gene_9221.t3
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.930|GO:0110165_0.927|GO:0005622_0.860|GO:0003674_0.848|GO:0016020_0.835|GO:0043226_0.797|GO:0005488_0.789|GO:0043229_0.779|GO:0005737_0.770|GO:0005515_0.759|GO:0043227_0.739|GO:0043231_0.706|GO:0042802_0.665|GO:0005634_0.625|GO:0031974_0.589|GO:0043233_0.589|GO:0070013_0.585|GO:0031981_0.583|GO:0005654_0.566
|
IPR008906+520-573+|IPR012337+150-573+|IPR052035+130-576+
|
— |
PF05699+520-573+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+130-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
565-607
|
1.000
|
1-564
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
69648.120
|
9.187
|
22.500
|
27.512
|
11.203
|
52.224
|
47.776
|
16.145
|
11.367
|
44.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
saddlebrown
|
110.380
|
106.135
|
69.557
|
63.451
|
52.584
|
106.447
|
29.871
|
95.402
|
178.947
|
152.412
|
163.784
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.840
|
-0.880
|
— | — |
1.032
|
-1.828
|
— |
-1.539
|
— | — | — | — | — |
No JSON data available for plots.