Hg_chrom4_TN10mRNA_7590
Organism: Heterodera glycines Gene Locus: chr4:4492886-4498489 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.906 | 0.982 | 0.563 | 0.796 | 0.644 | 0.718 | 1.382 | 0.726 | 1.596 | 0.647 | 1.847 | 1.919 | 0.991 | 1.077 | 1.508 | 0.68 | 1.047 | 1.256 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7172
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
44-134
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.108
|
0.023
|
0.011
|
0.233
|
0.297
|
0.561
|
0.539
|
0.042
|
0.734
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002062
|
2.000
|
2.000
|
Hsc_gene_10089.t1;Hsc_gene_10089.t2
|
Hsc_gene_10089.t1;Hsc_gene_10089.t2
|
— |
Q8R0W5.2 Carboxylesterase 4A [Mus musculus]
|
KAI1730492.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.860|GO:0005575_0.847|GO:0110165_0.843|GO:0009987_0.794|GO:0003674_0.770|GO:0016020_0.728|GO:0065007_0.636|GO:0043226_0.615|GO:0071944_0.534|GO:0005622_0.516|GO:0005886_0.515|GO:0050789_0.506
|
IPR002018+219-732+|IPR019819+299-309+|IPR029058+188-743_216-737+|IPR051093+219-743+
|
— |
PF00135+219-732+Carboxylesterase_family
|
— |
PTHR43903+219-743+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-796
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
89272.340
|
6.973
|
6.000
|
22.487
|
14.322
|
43.593
|
56.407
|
12.312
|
10.176
|
50.628
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
365.483
|
688.147
|
362.549
|
140.672
|
114.896
|
134.178
|
479.888
|
197.222
|
823.870
|
187.006
|
459.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.154
|
-2.427
|
-1.256
|
-0.323
|
— |
1.848
|
0.454
|
1.423
|
— | — | — | — | — |
No JSON data available for plots.