SCN Proteipedia

Hg_chrom4_TN10mRNA_7592

Organism: Heterodera glycines Gene Locus: chr4:4499801-4505103 Feature type: polypeptide

Protein Sequence

Length: 898

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.868	1.062	0.992	0.806	0.78	1.199	0.477	1.392	1.114	1.52	0.574	1.114	1.33	0.878	1.273	1.925	0.876	0.793	0.514	0.524	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7173	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.904

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RREKIRLAVFSEKDRRL	—	—	1-42	0.991	—	—	0.000	—	—	0.215	0.228	0.027	0.610	0.186	0.407	0.338	0.338	0.352	0.067

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001272	2.000	3.000	Hsc_gene_10088.t1;Hsc_gene_10088.t2;Hsc_gene_10088.t3	Hsc_gene_10088.t1;Hsc_gene_10088.t2;Hsc_gene_10088.t3	—	—	KAI1732713.1 folliculin-interacting protein middle domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.964\|GO:0005575_0.932\|GO:0110165_0.931\|GO:0009987_0.920\|GO:0065007_0.915\|GO:0050789_0.900\|GO:0050794_0.881\|GO:0005622_0.862\|GO:0050896_0.840\|GO:0051716_0.810\|GO:0007154_0.783\|GO:0023052_0.778\|GO:0048519_0.771\|GO:0007165_0.764\|GO:0048523_0.754\|GO:0005737_0.749\|GO:0035556_0.702\|GO:0048518_0.630\|GO:0048522_0.613\|GO:0010646_0.572\|GO:0023051_0.571\|GO:0048583_0.567\|GO:0009966_0.554\|GO:0043226_0.541\|GO:1902531_0.536\|GO:0043229_0.527\|GO:0003674_0.517\|GO:0031929_0.505\|GO:0032006_0.505	IPR028085+390-600+\|IPR028086+618-893+	—	PF14637+390-600+Folliculin-interacting_protein_middle_domain\|PF14638+618-893+Folliculin-interacting_protein_C-terminus	—	PTHR21634+782-894+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-103	1.000	104-898	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	99493.720	7.379	11.500	22.940	10.022	51.002	48.998	12.806	10.134	52.450

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1789.343	4472.049	2125.340	2127.833	1661.910	2177.151	2630.149	2768.750	1055.263	300.738	624.106

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.303	-1.209	0.110	-0.388	0.404	0.283	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser