Hg_chrom4_TN10mRNA_7594
Organism: Heterodera glycines Gene Locus: chr4:4508663-4510435 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.493 | 0.441 | 0.522 | 0.505 | 1.088 | 0.722 | 1.515 | 0.943 | 1.925 | 0.367 | 1.248 | 3.367 | 0.524 | 1.051 | 1.732 | 0.695 | 1.286 | 0.699 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RRRR
|
52-72
|
0.998
|
8-58
|
0.962
|
— | — |
0.000
|
— | — |
0.172
|
0.150
|
0.036
|
0.091
|
0.741
|
0.361
|
0.646
|
0.029
|
0.070
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008454
|
1.000
|
1.000
|
Hsc_gene_10087.t2
|
Hsc_gene_10087.t1;Hsc_gene_10087.t2
|
— |
Q9W429.1 UDP-xylose and UDP-N-acetylglucosamine transporter [Drosophila melanogaster]
|
KAI1717556.1 UAA transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0008150_0.841|GO:0005575_0.814|GO:0110165_0.814|GO:0016020_0.797|GO:0071944_0.738|GO:0005886_0.726|GO:0005622_0.695|GO:0005737_0.689|GO:0043226_0.682|GO:0043227_0.677|GO:0043229_0.670|GO:0043231_0.670|GO:0009987_0.662|GO:0005773_0.635|GO:0012505_0.607|GO:0003674_0.605|GO:0006810_0.580|GO:0051179_0.580|GO:0051234_0.580|GO:0055085_0.519
|
IPR013657+18-313_30-312+
|
— |
PF08449+18-313+UAA_transporter_family
|
— |
PTHR10778+30-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
37052.260
|
9.424
|
12.000
|
16.061
|
18.182
|
38.788
|
61.212
|
10.606
|
5.455
|
46.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1115.829
|
690.673
|
569.934
|
553.687
|
579.324
|
532.626
|
755.656
|
528.289
|
263.545
|
3105.273
|
1887.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.507
|
-0.456
|
— | — | — |
0.514
|
— |
0.659
|
-3.674
|
— | — | — | — |
No JSON data available for plots.