Hg_chrom4_TN10mRNA_7595
Organism: Heterodera glycines Gene Locus: chr4:4510678-4513407 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.893 | 1.02 | 0.698 | 0.441 | 1.188 | 1.078 | 0.718 | 0.823 | 0.772 | 1.779 | 0.692 | 1.075 | 1.117 | 1.09 | 1.306 | 1.619 | 1.079 | 0.831 | 0.844 | 0.054 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7175
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,RRVLSPICRHRSDERRTER
|
11-33
|
0.969
|
61-86
|
1.000
|
— | — |
0.000
|
— | — |
0.872
|
0.040
|
0.037
|
0.335
|
0.079
|
0.084
|
0.163
|
0.029
|
0.040
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008455
|
1.000
|
1.000
|
Hsc_gene_10086.t1
|
Hsc_gene_10086.t1
|
— |
Q5BDU4.2 Protein hir1 [Aspergillus nidulans FGSC A4]
|
KAF7636573.1 Hira domain-containing protein [Meloidogyne graminicola];KAF7636574.1 Hira domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006325|GO:0006338|GO:0006351|GO:0006355
|
GO:0008150_0.873|GO:0005575_0.856|GO:0110165_0.852|GO:0009987_0.832|GO:0016020_0.784|GO:0005622_0.767|GO:0043226_0.722|GO:0043229_0.713|GO:0043227_0.680|GO:0043231_0.657|GO:0071840_0.597|GO:0016043_0.594|GO:0003674_0.543|GO:0005634_0.537|GO:0005488_0.514
|
IPR011494+280-470+|IPR031120+9-471+
|
— |
PF07569+280-470+TUP1-like_enhancer_of_split
|
— |
PTHR13831+9-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-196;508-547
|
1.000
|
197-507
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
59802.060
|
7.416
|
4.500
|
23.583
|
6.947
|
50.091
|
49.909
|
12.614
|
10.969
|
52.285
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
642.436
|
803.443
|
825.426
|
681.475
|
685.409
|
726.586
|
2109.921
|
645.450
|
166.243
|
256.834
|
218.010
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.191
|
-0.375
|
-0.168
|
— | — |
1.548
|
-0.278
|
1.852
|
— | — | — | — | — |
No JSON data available for plots.