Hg_chrom4_TN10mRNA_7600
Organism: Heterodera glycines Gene Locus: chr4:4537120-4540023 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.117 | 0.953 | 0.527 | 1.456 | 1.176 | 0.702 | 1.092 | 0.679 | 0.944 | 0.794 | 2.055 | 1.031 | 0.63 | 2.05 | 1.185 | 1.11 | 0.893 | 0.672 | 0.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7178
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.614
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKRR,SRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.290
|
0.266
|
0.024
|
0.622
|
0.104
|
0.173
|
0.189
|
0.177
|
0.475
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008458
|
1.000
|
1.000
|
Hsc_gene_10083.t1
|
Hsc_gene_10083.t1;Hsc_gene_10083.t4
|
— | — |
OZC10124.1 globin [Onchocerca flexuosa]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR009050+141-300+|IPR012292+140-306+|IPR044399+149-296+|IPR050532+105-315+
|
— | — | — |
PTHR46458+105-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
49-114;307-458
|
2.000
|
1-48;115-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
51685.080
|
8.790
|
11.000
|
31.441
|
7.860
|
55.895
|
44.105
|
17.467
|
13.974
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
370.319
|
523.408
|
761.185
|
493.226
|
164.005
|
115.323
|
513.086
|
331.122
|
491.768
|
163.311
|
304.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.310
|
-0.223
|
-0.517
|
-1.621
|
-0.494
|
2.165
|
1.418
|
0.775
|
— | — | — | — | — |
No JSON data available for plots.