SCN Proteipedia

Hg_chrom4_TN10mRNA_7605

Organism: Heterodera glycines Gene Locus: chr4:4556343-4562114 Feature type: polypeptide

Protein Sequence

Length: 750

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.132	1.24	0.63	0.966	0.422	0.718	0.873	1.333	1.156	1.243	0.626	1.098	1.333	0.974	1.224	1.848	0.831	0.828	1.333	0.549	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7182	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RVSKRRI,RKAFKQILTCERERPTKK	1-38	0.836	39-124	0.988	—	—	0.000	—	—	0.102	0.079	0.006	0.126	0.217	0.257	0.188	0.001	0.833	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008461	1.000	1.000	Hsc_gene_10079.t2	Hsc_gene_10079.t1;Hsc_gene_10079.t2	—	Q18775.2 Dopamine receptor 4 [Caenorhabditis elegans]	KAI6235488.1 G-PROTEIN-RECEP-F1-2 domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.978\|GO:0009987_0.926\|GO:0065007_0.902\|GO:0050789_0.890\|GO:0050794_0.873\|GO:0005575_0.864\|GO:0110165_0.863\|GO:0003674_0.821\|GO:0050896_0.818\|GO:0007154_0.816\|GO:0023052_0.814\|GO:0051716_0.790\|GO:0007165_0.763\|GO:0016020_0.725\|GO:0007186_0.681\|GO:0005622_0.675\|GO:0010646_0.661\|GO:0060089_0.658\|GO:0023051_0.656\|GO:0038023_0.650\|GO:0071944_0.646\|GO:0005886_0.638\|GO:0032501_0.626\|GO:0048583_0.613\|GO:0009966_0.602\|GO:0005488_0.565\|GO:0004888_0.553\|GO:0035556_0.545\|GO:0141124_0.545\|GO:1902531_0.544\|GO:0048519_0.526	IPR000276+148-172_157-709_163-694_181-202_227-249_263-284_309-332_635-659_676-702+\|IPR017452+163-694+	SM01381+157-709+	PF00001+163-694+7_transmembrane_receptor_(rhodopsin_family)	G3DSA:1.20.1070.10:FF:000523+138-349+5-hydroxytryptamine_receptor_2B	PTHR24248+139-712+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	349-626;745-750	2.000	1-348;627-744	9m4t_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.952	81060.540	9.948	41.000	18.800	11.067	44.933	55.067	12.800	6.000	57.200

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	283.725	736.459	679.674	353.818	138.000	146.182	161.516	387.626	99.311	190.586	151.468

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.344	-1.195	-0.834	-1.390	—	—	1.308	-1.121	—	—	—	—	—

No JSON data available for plots.

Back to Browser