Hg_chrom4_TN10mRNA_7608
Organism: Heterodera glycines Gene Locus: chr4:4572678-4575952 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.129 | 0.63 | 0.657 | 2.257 | 0.564 | 1.273 | 0.484 | 2.032 | 0.401 | 1.19 | 0.513 | 0.531 | 1.317 | 2.171 | 1.06 | 2.128 | 0.703 | 0.616 | 0.347 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7184
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
20-70
|
0.964
|
— | — |
0.000
|
— | — |
0.250
|
0.264
|
0.020
|
0.738
|
0.212
|
0.436
|
0.425
|
0.047
|
0.144
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008463
|
2.000
|
0.000
|
0.000
|
Hsc_gene_10076.t1;Hsc_gene_10076.t2
|
— |
Q17RB8.2 LON peptidase N-terminal domain and RING finger protein 1 [Homo sapiens]
|
KAI6230698.1 Zinc finger and Fibronectin and SPla RYanodine receptor SPRY domain containing protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0005575_0.887|GO:0110165_0.887|GO:0005622_0.796|GO:0008150_0.759|GO:0016020_0.648|GO:0005737_0.635|GO:0071944_0.564|GO:0050789_0.546|GO:0065007_0.546|GO:0005886_0.543|GO:0009987_0.538|GO:0050794_0.538
|
IPR000315+273-322_352-394_355-394+|IPR001841+16-53+|IPR013083+8-66+|IPR017907+31-40+|IPR047153+11-403+
|
SM00336+273-322_352-394+
|
PF00643+355-394+B-box_zinc_finger|PF22586+278-318+ANCHR-like_B-box_zinc-binding_domain
|
— |
PTHR25462+11-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-276
|
2.000
|
1-109;277-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
47472.760
|
7.983
|
16.000
|
19.639
|
10.384
|
46.501
|
53.499
|
12.641
|
6.998
|
61.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
144.948
|
347.803
|
96.432
|
76.258
|
93.796
|
147.835
|
117.221
|
71.100
|
43.985
|
244.741
|
158.703
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.080
|
-2.326
|
— | — |
0.672
|
-0.326
|
-1.164
|
0.863
|
— | — | — | — | — |
No JSON data available for plots.