Hg_chrom4_TN10mRNA_7610
Organism: Heterodera glycines Gene Locus: chr4:4585980-4591721 Feature type: polypeptideProtein Sequence
Length: 776
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 1.199 | 0.797 | 0.755 | 0.945 | 1.619 | 1.059 | 1.418 | 0.745 | 0.888 | 0.644 | 1.895 | 1.539 | 1.066 | 1.552 | 1.325 | 0.613 | 0.859 | 0.397 | 0.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7186
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR,RKRSESTEWEGTERKRRPK,KRSESTEWEGTERKRRPKG,RKRRPKGAEGRKGYGKRRS,KRRPKGAEGRKGYGKRRSE,ERKRRPKGAEGRKGYGKRR
|
23-43
|
0.979
|
35-82
|
0.868
|
— | — |
0.094
|
— | — |
0.336
|
0.253
|
0.014
|
0.576
|
0.368
|
0.141
|
0.342
|
0.275
|
0.357
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008464
|
1.000
|
1.000
|
Hsc_gene_10075.t1
|
Hsc_gene_10075.t1
|
— |
Q3TEL6.2 E3 ubiquitin ligase Rnf157 [Mus musculus]
|
KAI1733313.1 zinc finger, c3HC4 type (RING finger) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0061630
|
GO:0008150_0.752|GO:0003674_0.720|GO:0005575_0.711|GO:0110165_0.703|GO:0009987_0.681|GO:0065007_0.669|GO:0050789_0.643|GO:0050794_0.620|GO:0005622_0.588|GO:0003824_0.544|GO:0140096_0.530|GO:0016740_0.526|GO:0016020_0.517|GO:0016746_0.505
|
IPR001841+347-385_347-386+|IPR013083+327-396+|IPR045194+67-400+
|
SM00184+347-385+
|
PF13920+345-390+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22996+67-400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-100;449-776
|
1.000
|
101-448
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.929
|
85451.230
|
8.895
|
25.000
|
24.742
|
10.180
|
49.227
|
50.773
|
14.691
|
10.052
|
52.835
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
3218.403
|
7243.821
|
4670.355
|
2189.040
|
2305.439
|
3104.565
|
3353.944
|
2967.718
|
3781.249
|
1556.494
|
2509.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.863
|
-1.864
|
-0.984
|
— |
0.444
|
— | — |
0.320
|
— | — | — | — | — |
No JSON data available for plots.