Hg_chrom4_TN10mRNA_7612
Organism: Heterodera glycines Gene Locus: chr4:4596338-4601589 Feature type: polypeptideProtein Sequence
Length: 655
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 0.746 | 0.416 | 0.948 | 1.094 | 0.705 | 0.654 | 1.298 | 0.916 | 1.114 | 0.625 | 1.437 | 1.951 | 1.116 | 1.683 | 1.723 | 0.926 | 0.972 | 0.47 | 0.718 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7188
|
— | — |
0.667
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
AERRPRDGRRHAEKRAEQKK
|
72-92
|
0.993
|
19-39
|
1.000
|
— | — |
0.000
|
— | — |
0.270
|
0.129
|
0.022
|
0.145
|
0.164
|
0.108
|
0.183
|
0.020
|
0.495
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008466
|
1.000
|
1.000
|
Hsc_gene_10192.t1
|
Hsc_gene_10192.t1
|
— | — |
KAH7718323.1 Protein C32D5.7 [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
441-655
|
1.000
|
1-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
73340.990
|
9.587
|
31.500
|
23.817
|
12.672
|
47.481
|
52.519
|
14.962
|
8.855
|
50.840
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
1580.774
|
1106.557
|
2117.194
|
1920.265
|
1493.337
|
1724.015
|
1466.744
|
1730.046
|
707.697
|
2050.804
|
1475.187
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
0.658
|
— |
-0.395
|
0.221
|
-0.222
|
— | — | — | — | — | — |
2.985
|
No JSON data available for plots.