Hg_chrom4_TN10mRNA_7613
Organism: Heterodera glycines Gene Locus: chr4:4607543-4611215 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.649 | 0.646 | 0.788 | 0.677 | 0.651 | 0.242 | 1.142 | 1.579 | 1.715 | 0.461 | 2.239 | 1.974 | 0.781 | 1.295 | 1.015 | 1.29 | 1.231 | 0.781 | 1.12 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7189
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.121
|
0.096
|
0.018
|
0.094
|
0.160
|
0.329
|
0.244
|
0.014
|
0.786
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008467
|
1.000
|
1.000
|
Hsc_gene_10189.t1
|
Hsc_gene_10189.t1
|
— | — |
KAI1731016.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0007218|GO:0008188|GO:0016020
|
GO:0008150_0.956|GO:0009987_0.917|GO:0003674_0.850|GO:0065007_0.831|GO:0050789_0.811|GO:0050896_0.804|GO:0051716_0.792|GO:0060089_0.779|GO:0050794_0.775|GO:0023052_0.774|GO:0038023_0.773|GO:0007154_0.772|GO:0004888_0.758|GO:0007165_0.755|GO:0007186_0.741|GO:0005488_0.718|GO:0004930_0.711|GO:0007218_0.682|GO:0042277_0.671|GO:0001653_0.666|GO:0008528_0.666|GO:0042923_0.656|GO:0008188_0.654|GO:0006810_0.566|GO:0051179_0.566|GO:0051234_0.566
|
IPR000276+64-88_85-351_103-124_334-360+|IPR017452+79-352+|IPR039952+46-383+
|
— |
PF00001+85-351+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR21643+46-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
45045.180
|
8.689
|
11.500
|
19.289
|
14.213
|
39.594
|
60.406
|
11.675
|
7.614
|
46.193
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
807.130
|
280.273
|
930.953
|
706.452
|
246.934
|
93.459
|
277.209
|
638.218
|
800.607
|
1740.676
|
1337.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.502
|
1.196
|
-0.289
|
-1.548
|
-1.388
|
1.580
|
2.672
|
-1.062
|
— | — |
-2.544
|
— | — |
No JSON data available for plots.