Hg_chrom4_TN10mRNA_7614
Organism: Heterodera glycines Gene Locus: chr4:4611282-4614063 Feature type: polypeptideProtein Sequence
Length: 602
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.004 | 1.082 | 0.604 | 0.802 | 1.633 | 1.235 | 0.751 | 0.831 | 0.701 | 1.167 | 0.78 | 1.27 | 0.831 | 1.022 | 1.458 | 1.875 | 0.79 | 0.705 | 0.383 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7190
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RKRK,RKRRENEGEEEEEKEKGKR,KRRENEGEEEEEKEKGKRTAKKKKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.895
|
0.068
|
0.017
|
0.310
|
0.041
|
0.034
|
0.087
|
0.007
|
0.031
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003813
|
2.000
|
1.000
|
Hsc_gene_10188.t1
|
Hsc_gene_10188.t1
|
— |
P34303.1 Zinc finger transcription factor family protein 30 [Caenorhabditis elegans]
|
KAI1713756.1 zinc finger transcription factor family protein 30 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677
|
GO:0008150_0.969|GO:0065007_0.943|GO:0009987_0.941|GO:0050789_0.924|GO:0050794_0.924|GO:0032502_0.648|GO:0048856_0.648|GO:0032501_0.645|GO:0005575_0.600|GO:0007275_0.600|GO:0110165_0.597|GO:0048731_0.592|GO:0048869_0.582|GO:0030154_0.573|GO:0007399_0.557|GO:0005622_0.552|GO:0022008_0.549|GO:0016020_0.545|GO:0048699_0.531|GO:0043226_0.529|GO:0030182_0.521|GO:0043229_0.513
|
IPR007889+69-118+|IPR009057+69-128+|IPR013087+218-246+
|
— |
PF04218+69-118+CENP-B_N-terminal_DNA-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83;126-498
|
2.000
|
84-125;499-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
65675.370
|
6.508
|
0.000
|
27.076
|
5.980
|
54.485
|
45.515
|
13.953
|
13.123
|
53.156
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
170.195
|
99.612
|
19.029
|
13.524
|
535.192
|
836.888
|
96.263
|
86.859
|
86.566
|
46.914
|
63.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.620
|
-3.017
|
— |
5.273
|
0.662
|
-3.111
|
-3.386
|
— | — | — | — | — | — |
No JSON data available for plots.