Hg_chrom4_TN10mRNA_7619
Organism: Heterodera glycines Gene Locus: chr4:4621935-4623931 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.66 | 0.86 | 0.571 | 0.867 | 1.212 | 0.985 | 0.709 | 1.366 | 0.863 | 1.075 | 1.808 | 1.642 | 0.727 | 0.675 | 1.013 | 0.969 | 1.003 | 2.182 | 1.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7194
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRSIMPEKMEKTKWRPPKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.167
|
0.502
|
0.051
|
0.402
|
0.751
|
0.476
|
0.626
|
0.009
|
0.183
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008470
|
1.000
|
1.000
|
Hsc_gene_10185.t1
|
Hsc_gene_10185.t1
|
— |
Q9GZE9.1 Lipid droplet localized protein [Caenorhabditis elegans]
|
KAI1727108.1 saccharopine dehydrogenase NADP binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.883|GO:0016020_0.809|GO:0005622_0.646|GO:0071944_0.641|GO:0005737_0.634|GO:0043226_0.617|GO:0005886_0.607|GO:0043229_0.597|GO:0043227_0.582|GO:0043231_0.571
|
IPR005097+8-141+|IPR036291+7-186+|IPR051276+1-420+
|
— |
PF03435+8-141+Saccharopine_dehydrogenase_NADP_binding_domain
|
G3DSA:3.40.50.720:FF:000178+6-173+Saccharopine_dehydrogenase-like_oxidoreductase
|
PTHR12286+1-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
47227.140
|
7.892
|
5.000
|
21.749
|
14.184
|
42.317
|
57.683
|
11.820
|
9.929
|
49.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
5645.960
|
2112.579
|
3139.199
|
7147.411
|
16340.138
|
11359.720
|
9629.207
|
3762.541
|
1093.621
|
3821.810
|
2652.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.343
|
1.622
|
1.295
|
1.161
|
-0.510
|
-0.229
|
-1.699
|
1.498
|
— | — |
2.270
|
— | — |
No JSON data available for plots.