Hg_chrom4_TN10mRNA_7622
Organism: Heterodera glycines Gene Locus: chr4:4628367-4629584 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.773 | 1.263 | 1.146 | 1.208 | 0.62 | 1.079 | 1.813 | 1.611 | 1.47 | 0.687 | 0.711 | 1.427 | 0.523 | 0.74 | 1.079 | 0.594 | 0.778 | 1.394 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.514
|
0.117
|
0.019
|
0.723
|
0.352
|
0.238
|
0.162
|
0.072
|
0.203
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008471
|
1.000
|
1.000
|
Hsc_gene_10184.t1
|
Hsc_gene_10184.t1
|
— |
P53611.2 Geranylgeranyl transferase type-2 subunit beta [Homo sapiens]
|
KAI3418868.1 putative geranylgeranyl transferase type-2 subunit beta [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004663|GO:0008318|GO:0018344
|
GO:0008150_0.908|GO:0005575_0.835|GO:0110165_0.762|GO:0009987_0.734|GO:0003674_0.682|GO:0005622_0.663|GO:0005737_0.663|GO:0003824_0.617|GO:0016740_0.513
|
IPR001330+54-67_72-114_119-159_167-210_215-257_263-307+|IPR008930+5-327+|IPR026873+24-306+|IPR045089+19-325+
|
— |
PF00432+54-67_72-114_119-159_167-210_215-257_263-307+Prenyltransferase_and_squalene_oxidase_repeat
|
G3DSA:1.50.10.20:FF:000012+19-331+Geranylgeranyl_transferase_type-2_subunit_beta
|
PTHR11774+19-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-331
|
6o60_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
36440.320
|
4.690
|
-14.000
|
25.982
|
12.991
|
42.900
|
57.100
|
11.782
|
14.199
|
49.849
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1558.225
|
1311.834
|
1215.521
|
1297.448
|
1459.422
|
1409.145
|
822.169
|
1636.866
|
1371.318
|
2356.594
|
1934.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
-0.153
|
0.202
|
0.137
|
— |
-0.768
|
— |
-0.852
|
— | — | — | — | — |
No JSON data available for plots.