Hg_chrom4_TN10mRNA_7623
Organism: Heterodera glycines Gene Locus: chr4:4629631-4630141 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.342 | 0.535 | 0.254 | 0.98 | 0.377 | 0.7 | 0.735 | 1.634 | 1.093 | 2.785 | 1.298 | 1.021 | 0.848 | 1.351 | 0.945 | 0.603 | 1.337 | 1.131 | 1.081 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PRKKK,KKMGKKQVEKRIRIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.347
|
0.197
|
0.098
|
0.501
|
0.270
|
0.058
|
0.236
|
0.026
|
0.054
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008472
|
1.000
|
1.000
|
Hsc_gene_10183.t1
|
Hsc_gene_10183.t1
|
— |
P91914.1 Large ribosomal subunit protein eL27 [Caenorhabditis elegans]
|
KAI3418867.1 60S ribosomal protein L27 [Globodera pallida]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.901|GO:0110165_0.890|GO:0005622_0.873|GO:0043226_0.780|GO:0043229_0.769|GO:0005737_0.753|GO:0032991_0.564|GO:0043228_0.554|GO:0016020_0.549|GO:0043232_0.546|GO:0043227_0.521|GO:1990904_0.521|GO:0043231_0.517|GO:0005829_0.512
|
IPR001141+1-136_52-136+|IPR005824+4-31_7-32+|IPR008991+3-135+|IPR038655+1-136+|IPR041991+6-88+
|
SM00739+4-31+
|
PF00467+7-32+KOW_motif|PF01777+52-136+Ribosomal_L27e_protein_family
|
G3DSA:2.30.30.770:FF:000001+1-136+60S_ribosomal_protein_L27
|
PTHR10497+1-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
9cai_CZ
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
15692.830
|
10.997
|
23.000
|
35.294
|
10.294
|
48.529
|
51.471
|
26.471
|
8.824
|
39.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8059.076
|
2036.295
|
4613.001
|
9077.329
|
8554.824
|
6390.086
|
4316.597
|
2876.440
|
17204.767
|
8155.669
|
12033.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
2.019
|
1.085
|
-0.118
|
-0.406
|
-0.554
|
-1.258
|
0.731
|
— | — | — | — | — |
No JSON data available for plots.