Hg_chrom4_TN10mRNA_7625
Organism: Heterodera glycines Gene Locus: chr4:4632018-4637306 Feature type: polypeptideProtein Sequence
Length: 1,094
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 1.19 | 1.047 | 0.788 | 1.082 | 0.984 | 0.609 | 1.143 | 1.361 | 1.544 | 0.679 | 1.667 | 1.473 | 0.809 | 1.436 | 0.849 | 0.854 | 0.983 | 1.055 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.735
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.223
|
0.024
|
0.587
|
0.267
|
0.407
|
0.223
|
0.099
|
0.283
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008474
|
1.000
|
1.000
|
Hsc_gene_10181.t1
|
Hsc_gene_10181.t1
|
— |
Q9VLS1.2 Probable phosphorylase b kinase regulatory subunit beta [Drosophila melanogaster]
|
KAI6236314.1 Phosphorylase b kinase regulatory subunit [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005516|GO:0005975|GO:0005977
|
GO:0005575_0.790|GO:0110165_0.785|GO:0008150_0.762|GO:0009987_0.712|GO:0005622_0.690|GO:0005737_0.642|GO:0008152_0.592|GO:0044238_0.566|GO:0044237_0.554
|
IPR008734+10-663+|IPR008928+16-453+|IPR011613+22-772+|IPR045583+918-1034+
|
— |
PF00723+22-772+Glycosyl_hydrolases_family_15|PF19292+918-1034+Phosphorylase_b_kinase_C-terminal_domain
|
G3DSA:1.50.10.10:FF:000065+43-434+Phosphorylase_b_kinase_regulatory_subunit
|
PTHR10749+10-663+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1094
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
125559.540
|
6.793
|
4.500
|
26.051
|
11.974
|
46.161
|
53.839
|
13.803
|
12.249
|
45.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
2449.712
|
2311.809
|
1964.211
|
1567.212
|
1481.872
|
1387.614
|
1807.081
|
1977.305
|
1700.159
|
4755.959
|
3446.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.465
|
-0.698
|
-0.217
|
— | — |
0.391
|
0.404
|
— | — | — | — | — | — |
No JSON data available for plots.