SCN Proteipedia

Hg_chrom4_TN10mRNA_7626

Organism: Heterodera glycines Gene Locus: chr4:4637494-4642602 Feature type: polypeptide

Protein Sequence

Length: 978

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.153	1.141	0.911	0.67	1.142	1.626	0.645	1.38	0.909	1.216	0.899	1.203	0.966	1.062	0.96	1.198	0.922	0.852	0.551	0.511	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7201	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.800

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	7-50	0.997	—	—	0.000	—	—	0.272	0.101	0.014	0.716	0.171	0.153	0.207	0.083	0.539	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003815	1.000	2.000	Hsc_gene_10180.t1;Hsc_gene_10180.t2	Hsc_gene_10180.t1;Hsc_gene_10180.t2	—	—	KAI1722195.1 adenomatous polyposis coli protein-related protein 1 [Ditylenchus destructor]	No	0.190

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.959\|GO:0005575_0.936\|GO:0110165_0.936\|GO:0009987_0.916\|GO:0003674_0.868\|GO:0065007_0.866\|GO:0005622_0.852\|GO:0050789_0.852\|GO:0016020_0.846\|GO:0050794_0.827\|GO:0005488_0.815\|GO:0050896_0.804\|GO:0071944_0.796\|GO:0032501_0.794\|GO:0016043_0.791\|GO:0071840_0.791\|GO:0051179_0.788\|GO:0043226_0.784\|GO:0005515_0.780\|GO:0051716_0.778\|GO:0032502_0.777\|GO:0048856_0.777\|GO:0006810_0.769\|GO:0043229_0.769\|GO:0051234_0.769\|GO:0008152_0.762\|GO:0044238_0.759\|GO:0043170_0.755\|GO:0048518_0.753\|GO:0007275_0.750\|GO:0044237_0.750\|GO:0023052_0.745\|GO:0007154_0.744\|GO:0009058_0.744\|GO:0048519_0.744\|GO:0005737_0.742\|GO:0048522_0.742\|GO:0048731_0.740\|GO:0030154_0.737\|GO:0048869_0.737\|GO:0019222_0.735\|GO:0009059_0.732\|GO:0044249_0.732\|GO:0043227_0.731\|GO:0048523_0.728\|GO:0007165_0.727\|GO:0006139_0.725\|GO:0031323_0.725\|GO:0010467_0.723\|GO:0060255_0.723\|GO:0010646_0.722\|GO:0080090_0.720\|GO:0006996_0.718\|GO:0023051_0.716\|GO:0065008_0.716\|GO:0048513_0.713\|GO:0090304_0.713\|GO:0034654_0.712\|GO:0048583_0.712\|GO:0009889_0.711\|GO:0009893_0.708\|GO:0031326_0.708\|GO:0141187_0.708\|GO:0009966_0.707\|GO:0010468_0.706\|GO:0010556_0.706\|GO:0051239_0.704\|GO:0009653_0.703\|GO:0010604_0.703\|GO:0031325_0.703\|GO:0016070_0.702\|GO:0032774_0.702\|GO:0043231_0.702\|GO:0007166_0.697\|GO:0009891_0.696\|GO:0010647_0.696\|GO:0022414_0.696\|GO:0031328_0.696\|GO:0050793_0.695\|GO:0019219_0.694\|GO:0023056_0.694\|GO:0009888_0.693\|GO:0061024_0.693\|GO:0016192_0.692\|GO:0006351_0.691\|GO:0010557_0.691\|GO:0048584_0.691\|GO:0051252_0.691\|GO:2001141_0.688\|GO:0006355_0.687\|GO:0009967_0.687\|GO:0009790_0.686\|GO:0048870_0.686\|GO:2000026_0.686\|GO:0000902_0.685\|GO:0045935_0.685\|GO:0048646_0.685\|GO:0006366_0.684\|GO:0010648_0.684\|GO:0016050_0.684\|GO:0051254_0.684\|GO:0006357_0.683\|GO:0009968_0.683\|GO:0023057_0.683\|GO:0048585_0.683\|GO:0051301_0.683\|GO:0009791_0.682\|GO:0016477_0.682\|GO:0098657_0.682\|GO:0035295_0.681\|GO:0051093_0.681\|GO:0051241_0.681\|GO:1902680_0.681\|GO:0045893_0.680\|GO:0009792_0.679\|GO:0022603_0.679\|GO:0040011_0.679\|GO:0006900_0.678\|GO:0009887_0.678\|GO:0035239_0.678\|GO:0048729_0.678\|GO:0006897_0.677\|GO:0010324_0.677\|GO:0045944_0.677\|GO:0048568_0.677\|GO:0016055_0.676\|GO:0022604_0.676\|GO:0030334_0.676\|GO:0040012_0.676\|GO:2000145_0.676\|GO:0030111_0.675\|GO:0048598_0.675\|GO:0048562_0.674\|GO:0060070_0.674\|GO:0060828_0.674\|GO:0002164_0.673\|GO:0001704_0.670\|GO:0001705_0.670\|GO:0001706_0.670\|GO:0001707_0.670\|GO:0001708_0.670\|GO:0001711_0.670\|GO:0001714_0.670\|GO:0002119_0.670\|GO:0006909_0.670\|GO:0006911_0.670\|GO:0007369_0.670\|GO:0007398_0.670\|GO:0007492_0.670\|GO:0007498_0.670\|GO:0008356_0.670\|GO:0008360_0.670\|GO:0016476_0.670\|GO:0030177_0.670\|GO:0030178_0.670\|GO:0035987_0.670\|GO:0040025_0.670\|GO:0040027_0.670\|GO:0040028_0.670\|GO:0043277_0.670\|GO:0043652_0.670\|GO:0045165_0.670\|GO:0045995_0.670\|GO:0048332_0.670\|GO:0048546_0.670\|GO:0048557_0.670\|GO:0048565_0.670\|GO:0048566_0.670\|GO:0048580_0.670\|GO:0048581_0.670\|GO:0051302_0.670\|GO:0051782_0.670\|GO:0055123_0.670\|GO:0060795_0.670\|GO:0061062_0.670\|GO:0061064_0.670\|GO:0090090_0.670\|GO:0099024_0.670\|GO:0008013_0.650\|GO:0030054_0.636\|GO:0005634_0.624\|GO:0005911_0.559\|GO:0070161_0.559\|GO:0005912_0.540\|GO:0005938_0.540	IPR011989+42-451+\|IPR016024+312-444+	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	512-978	1.000	1-511	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.685	107516.280	6.594	1.500	25.256	8.691	50.511	49.489	13.395	11.861	52.352

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1515.925	2572.955	1853.753	1276.947	1019.015	1515.143	3209.294	1328.352	1647.131	606.026	1052.214

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.703	-1.148	-0.429	-0.357	0.587	1.093	-0.296	1.416	—	—	—	—	—

No JSON data available for plots.

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