Hg_chrom4_TN10mRNA_7630
Organism: Heterodera glycines Gene Locus: chr4:4647478-4649072 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.171 | 0.671 | 0.231 | 0.895 | 1.635 | 0.999 | 2.685 | 0.522 | 0.68 | 0.508 | 1.382 | 1.398 | 1.613 | 1.918 | 1.103 | 0.77 | 1.119 | 0.516 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7204
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.790
|
0.200
|
0.016
|
0.464
|
0.075
|
0.043
|
0.056
|
0.075
|
0.017
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008476
|
1.000
|
1.000
|
Hsc_gene_10177.t1
|
Hsc_gene_10177.t1
|
— |
O14102.2 Spliceosome-associated protein 49 [Schizosaccharomyces pombe 972h-]
|
KAI1700849.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.775|GO:0005575_0.748|GO:0110165_0.738|GO:0005622_0.683|GO:0016020_0.656|GO:0003674_0.648|GO:0009987_0.645|GO:0043226_0.633|GO:0043229_0.624|GO:0043227_0.594|GO:0043231_0.590|GO:0005488_0.588|GO:0008152_0.558|GO:0005634_0.543|GO:0044238_0.536|GO:0043170_0.527|GO:0097159_0.507|GO:0006139_0.501
|
IPR000504+11-101_12-97+|IPR012677+4-177+|IPR035979+6-105+|IPR052285+8-235+
|
SM00360+12-97+
|
— | — |
PTHR13798+8-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-298
|
1.000
|
1-104
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.949
|
33485.470
|
10.433
|
19.000
|
27.181
|
13.423
|
51.007
|
48.993
|
18.121
|
9.060
|
52.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
673.486
|
678.153
|
910.212
|
755.053
|
813.900
|
832.739
|
1062.955
|
878.670
|
643.260
|
239.675
|
412.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.196
|
— |
-0.161
|
— | — |
0.363
|
— |
0.418
|
— | — | — | — | — |
No JSON data available for plots.