Hg_chrom4_TN10mRNA_7635
Organism: Heterodera glycines Gene Locus: chr4:4669146-4672500 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.956 | 0.747 | 0.59 | 1.484 | 1.229 | 0.489 | 1.884 | 1.37 | 1.342 | 0.519 | 1.209 | 1.522 | 0.79 | 1.398 | 1.076 | 0.73 | 0.83 | 1.054 | 1.209 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7209
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
nucleus
|
mitochondria
|
— |
5-27
|
0.992
|
— | — | — |
0.530
|
0.133
|
0.000
|
— |
0.829
|
0.088
|
0.015
|
0.241
|
0.060
|
0.028
|
0.056
|
0.105
|
0.058
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000414
|
2.000
|
6.000
|
Hsc_gene_10095.t1;Hsc_gene_10096.t1;Hsc_gene_10099.t1;Hsc_gene_10104.t1;Hsc_gene_10104.t2;Hsc_gene_10104.t3
|
Hsc_gene_10095.t1;Hsc_gene_10096.t1
|
— |
Q9U7E0.1 Transcriptional regulator ATRX homolog [Caenorhabditis elegans]
|
PIO73669.1 helicase protein [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016887
|
GO:0008150_0.902|GO:0009987_0.775|GO:0005575_0.702|GO:0110165_0.702|GO:0008152_0.697|GO:0043170_0.657|GO:0005622_0.640|GO:0044238_0.634|GO:0016020_0.612|GO:0003674_0.594|GO:0006139_0.583|GO:0090304_0.570|GO:0043226_0.563|GO:0043229_0.539|GO:0043227_0.518
|
IPR001650+1-119_7-69_27-69+|IPR027417+18-151_25-129+|IPR044574+25-224+|IPR049730+25-80+
|
SM00490+7-69+
|
PF00271+27-69+Helicase_conserved_C-terminal_domain
|
— |
PTHR45797+25-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
286-292
|
1.000
|
1-285
|
8b3f_b
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
33742.300
|
6.124
|
-2.500
|
27.055
|
14.726
|
47.945
|
52.055
|
14.041
|
13.014
|
43.151
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
933.186
|
1281.490
|
1232.980
|
1160.330
|
1211.278
|
1088.103
|
1549.372
|
1304.736
|
610.967
|
313.853
|
441.188
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.285
|
-0.280
|
— | — | — |
0.521
|
— |
0.392
|
— | — | — | — | — |