Hg_chrom4_TN10mRNA_7639
Organism: Heterodera glycines Gene Locus: chr4:4688528-4691805 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 0.908 | 0.811 | 1.154 | 0.805 | 0.953 | 0.509 | 0.929 | 1.074 | 1.683 | 0.422 | 1.312 | 1.91 | 1.18 | 1.024 | 1.779 | 1.006 | 0.929 | 1.001 | 0.656 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7213
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
5-32
|
0.966
|
— | — |
0.000
|
— | — |
0.097
|
0.029
|
0.047
|
0.151
|
0.445
|
0.339
|
0.421
|
0.006
|
0.554
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008480
|
1.000
|
1.000
|
Hsc_gene_10173.t1
|
Hsc_gene_10173.t1
|
— | — |
KAH7717175.1 CBN-LGC-20 protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
— |
IPR006201+131-445+|IPR006202+156-274+|IPR036734+142-275_148-327+
|
— |
PF02931+156-274+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— |
PTHR18945+131-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-538
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
60147.050
|
6.004
|
-3.000
|
18.959
|
12.268
|
45.167
|
54.833
|
9.665
|
9.294
|
51.859
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
374.196
|
927.324
|
1270.129
|
504.555
|
181.243
|
96.286
|
194.088
|
434.458
|
61.318
|
238.088
|
162.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.223
|
-1.015
|
-1.222
|
-1.508
|
-0.898
|
1.021
|
2.074
|
-1.022
|
— | — | — | — | — |
No JSON data available for plots.