Hg_chrom4_TN10mRNA_7643
Organism: Heterodera glycines Gene Locus: chr4:4703929-4714905 Feature type: polypeptideProtein Sequence
Length: 2,342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.043 | 0.776 | 0.339 | 1.722 | 1.697 | 0.483 | 1.366 | 0.788 | 0.739 | 1.572 | 1.13 | 0.546 | 1.035 | 1.333 | 1.61 | 1.281 | 0.744 | 0.263 | 0.239 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7216
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,KRKKR,QKRKK,KRSKTTSKAEKYKGR,KKREEEEKEKRRKEE,RKHRSQRSTERRRESR,KKPAPETKHKWERKHRS,KRRSSQRPDDEQKKKTA,RRRESRVEKREKRRERLR,RRESRVEKREKRRERLRSR,KRGEHGGGKSTSDANKRSK,KKKTALEVLNTKHAKKRKE,KKTALEVLNTKHAKKRKEF,KRASGTDGKDQAAKKAKKE,KKETKPSEEQSNHSKEKDK,KRKQKEIEEERERKKREKEDKKLREQEKKRQEEEKEKRKKEEHEEQKKRREQEKKREEEDEQKKREEEEKEKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.887
|
0.051
|
0.005
|
0.287
|
0.031
|
0.020
|
0.046
|
0.009
|
0.088
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001273
|
1.000
|
4.000
|
Hsc_gene_10170.t1;Hsc_gene_10170.t2;Hsc_gene_10170.t3;Hsc_gene_10170.t4
|
Hsc_gene_10170.t1;Hsc_gene_10170.t2;Hsc_gene_10170.t3;Hsc_gene_10170.t4
|
— |
Q8SX83.2 Protein split ends [Drosophila melanogaster]
|
KAI1711881.1 SPOC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.938|GO:0110165_0.937|GO:0005622_0.931|GO:0043226_0.915|GO:0008150_0.910|GO:0043229_0.897|GO:0016020_0.892|GO:0009987_0.852|GO:0043227_0.841|GO:0005634_0.817|GO:0043231_0.817|GO:0008152_0.757|GO:0009058_0.757|GO:0009059_0.757|GO:0043170_0.757|GO:0044237_0.757|GO:0044249_0.757|GO:0065007_0.756|GO:0050789_0.754|GO:0050794_0.739|GO:0010467_0.716|GO:0006139_0.708|GO:0044238_0.708|GO:0090304_0.708|GO:0034654_0.698|GO:0141187_0.698|GO:0019222_0.673|GO:0003674_0.662|GO:0005488_0.662|GO:0060255_0.662|GO:0080090_0.658|GO:0031323_0.657|GO:0016070_0.654|GO:0032774_0.653|GO:0071840_0.650|GO:0016043_0.642|GO:0009889_0.638|GO:0010468_0.634|GO:0010556_0.634|GO:0031326_0.634|GO:0019219_0.612|GO:0051252_0.599|GO:0048519_0.561|GO:0003676_0.557|GO:0097159_0.557|GO:0048523_0.550|GO:0032502_0.539|GO:0048856_0.539|GO:0032991_0.520|GO:0048518_0.513|GO:0048522_0.509|GO:0031974_0.503|GO:0031981_0.503|GO:0043233_0.503|GO:0070013_0.503
|
IPR000504+223-282_224-289_225-284+|IPR010912+2246-2342+|IPR012677+148-298+|IPR012921+2248-2338+|IPR016194+2243-2341_2247-2338+|IPR035979+222-372+
|
SM00360+224-289+
|
PF00076+225-284+RNA_recognition_motif|PF07744+2248-2338+SPOC_domain
|
— |
PTHR23189+186-664+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;132-229;418-2260
|
3.000
|
36-131;230-417;2261-2342
|
1ow1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
262800.860
|
9.839
|
86.000
|
34.244
|
5.850
|
64.432
|
35.568
|
19.641
|
14.603
|
49.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
3887.562
|
4565.443
|
2729.449
|
1911.293
|
1648.653
|
2305.042
|
1620.517
|
1724.452
|
8370.313
|
4541.030
|
6182.151
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.973
|
-1.393
|
-0.405
|
-0.245
|
0.498
|
-0.499
|
-0.527
|
— | — |
-1.960
|
— | — | — |
No JSON data available for plots.