Hg_chrom4_TN10mRNA_7645
Organism: Heterodera glycines Gene Locus: chr4:4716955-4718385 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 1.789 | 0.991 | 1.326 | 0.427 | 0.986 | 0.763 | 1.122 | 1.638 | 1.429 | 0.631 | 0.943 | 2.137 | 0.555 | 1.177 | 1.007 | 0.42 | 0.971 | 1.726 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
28-68
|
0.982
|
8-59
|
0.960
|
— | — |
0.000
|
— | — |
0.048
|
0.030
|
0.008
|
0.153
|
0.266
|
0.624
|
0.464
|
0.004
|
0.724
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008481
|
1.000
|
1.000
|
Hsc_gene_10167.t1
|
Hsc_gene_10167.t1
|
— |
Q22495.1 Tetraspanin-12 [Caenorhabditis elegans]
|
KAI3418811.1 Tetraspanin [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.876|GO:0009987_0.813|GO:0005575_0.777|GO:0110165_0.777|GO:0016020_0.721|GO:0071944_0.682|GO:0005886_0.680|GO:0003674_0.669|GO:0051179_0.551|GO:0005488_0.532|GO:0043226_0.509|GO:0005515_0.504
|
IPR000301+40-310+|IPR008952+143-273_144-272+|IPR018499+47-288_48-294+
|
— |
PF00335+48-294+Tetraspanin_family
|
— |
PTHR19282+47-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
35470.960
|
8.356
|
9.500
|
20.192
|
15.064
|
41.346
|
58.654
|
12.179
|
8.013
|
49.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
magenta
|
397.760
|
492.499
|
450.843
|
508.687
|
644.559
|
551.191
|
580.347
|
481.794
|
163.646
|
226.247
|
199.418
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.358
|
— |
0.283
|
0.310
|
-0.211
|
— |
-0.299
|
0.410
|
— | — | — | — | — |
No JSON data available for plots.