SCN Proteipedia

Hg_chrom4_TN10mRNA_7646

Organism: Heterodera glycines Gene Locus: chr4:4719527-4723639 Feature type: polypeptide

Protein Sequence

Length: 808

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	0.979	1.26	0.469	1.341	0.889	0.855	0.495	1.568	1.187	1.031	1.747	1.134	1.047	1.339	0.743	0.751	0.994	0.19	0.437	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7219	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	KRNEELATAILKKMPK	—	—	—	—	—	—	0.000	—	—	0.549	0.185	0.041	0.660	0.159	0.148	0.080	0.184	0.213	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008482	1.000	1.000	Hsc_gene_10166.t1	Hsc_gene_10166.t1	—	P54812.2 Transitional endoplasmic reticulum ATPase homolog 2 [Caenorhabditis elegans]	KAH7727161.1 cell division control protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016787\|GO:0016887	GO:0005575_0.875\|GO:0008150_0.874\|GO:0110165_0.840\|GO:0005622_0.793\|GO:0009987_0.785\|GO:0016020_0.713\|GO:0043226_0.707\|GO:0003674_0.706\|GO:0043229_0.693\|GO:0005737_0.680\|GO:0065007_0.649\|GO:0043227_0.637\|GO:0043231_0.611\|GO:0005488_0.606\|GO:0008152_0.576\|GO:0050789_0.576\|GO:0044238_0.552\|GO:0050896_0.543\|GO:0005515_0.536\|GO:0043170_0.527\|GO:0071840_0.519	IPR003338+31-112_31-114+\|IPR003593+243-379_516-655+\|IPR003959+247-376_520-653+\|IPR003960+347-365_623-641+\|IPR004201+131-197_133-196+\|IPR005938+47-772+\|IPR009010+28-111+\|IPR015415+730-769+\|IPR027417+206-468_212-376_470-653_478-770+\|IPR029067+115-204+\|IPR041569+399-439_675-711+\|IPR050168+9-768+	SM00382+243-379_516-655+\|SM01072+131-197+\|SM01073+31-114+	PF00004+247-376_520-653+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF02359+31-112+Cell_division_protein_48_(CDC48),_N-terminal_domain\|PF02933+133-196+Cell_division_protein_48_(CDC48),_domain_2\|PF09336+730-769+Vps4_C_terminal_oligomerisation_domain\|PF17862+399-439_675-711+AAA+_lid_domain	G3DSA:1.10.8.60:FF:000004+378-469+Cell_division_control_48\|G3DSA:2.40.40.20:FF:000003+8-113+Transitional_endoplasmic_reticulum_ATPase\|G3DSA:3.10.330.10:FF:000001+114-211+Cell_division_control_48\|G3DSA:3.40.50.300:FF:000012+208-376+Transitional_endoplasmic_reticulum_ATPase\|G3DSA:3.40.50.300:FF:000048+470-653+Transitional_endoplasmic_reticulum_ATPase	PTHR23077+9-768+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-45;777-808	1.000	46-776	9p07_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.579	89556.700	5.339	-9.000	29.332	6.807	46.782	53.218	14.356	14.975	49.505

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	yellow	11990.888	9309.337	12340.656	15483.780	19075.272	17593.187	13727.813	12737.923	7420.493	9294.275	8491.226

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.178	0.597	0.435	0.269	—	-0.347	-0.572	0.251	—	1.231	—	—	—

No JSON data available for plots.

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