Hg_chrom4_TN10mRNA_7647
Organism: Heterodera glycines Gene Locus: chr4:4726771-4728872 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.008 | 0.485 | 0.92 | 0.556 | 1.026 | 0.437 | 0.833 | 1.556 | 1.622 | 0.657 | 1.569 | 2.963 | 1.218 | 0.612 | 0.952 | 1.148 | 0.707 | 1.282 | 1.275 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7220
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KRKR
|
— | — | — | — | — |
0.553
|
0.045
|
5.000
|
— |
0.094
|
0.322
|
0.111
|
0.098
|
0.729
|
0.190
|
0.265
|
0.033
|
0.201
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008483
|
1.000
|
1.000
|
Hsc_gene_10165.t1
|
Hsc_gene_10165.t1
|
— |
Q08D99.1 Transmembrane protein 41A [Bos taurus]
|
KAI3418813.1 SNARE associated Golgi protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.810|GO:0110165_0.802|GO:0008150_0.691|GO:0009987_0.634|GO:0016020_0.550|GO:0071944_0.549|GO:0005886_0.540|GO:0043226_0.540
|
IPR032816+100-219+|IPR045014+2-261+
|
— |
PF09335+100-219+VTT_domain
|
— |
PTHR43220+2-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
300-300
|
1.000
|
1-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
34384.340
|
8.277
|
6.500
|
15.000
|
18.333
|
37.000
|
63.000
|
9.000
|
6.000
|
45.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
white
|
562.838
|
176.733
|
106.484
|
102.853
|
1284.157
|
3468.242
|
570.158
|
627.769
|
14.849
|
75.133
|
49.297
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.958
|
-0.918
|
— |
3.610
|
1.449
|
-2.597
|
-2.577
|
— | — | — |
4.554
|
— | — |