Hg_chrom4_TN10mRNA_7650
Organism: Heterodera glycines Gene Locus: chr4:4733502-4734363 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.478 | 1.927 | 0.904 | 0.0 | 1.473 | 1.558 | 0.46 | 1.381 | 0.368 | 1.867 | 0.67 | 1.625 | 1.228 | 0.531 | 1.128 | 0.789 | 0.362 | 0.837 | 0.425 | 0.975 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7223
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.621
|
0.560
|
0.078
|
0.500
|
0.054
|
0.162
|
0.035
|
0.145
|
0.042
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002065
|
3.000
|
1.000
|
Hsc_gene_10162.t1
|
Hsc_gene_10162.t1
|
— |
P09528.2 Ferritin heavy chain [Mus musculus]
|
KAH7730419.1 FTN-2 protein [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006826|GO:0006879|GO:0008199
|
GO:0005575_0.783|GO:0110165_0.776|GO:0005622_0.764|GO:0008150_0.743|GO:0005737_0.681|GO:0016020_0.679|GO:0043226_0.655|GO:0043229_0.632|GO:0003674_0.581|GO:0043227_0.579|GO:0043231_0.566|GO:0005488_0.544|GO:0009987_0.510
|
IPR001519+7-173+|IPR008331+18-157+|IPR009040+10-159+|IPR009078+4-174+|IPR012347+2-176+
|
— |
PF00210+18-157+Ferritin-like_domain
|
G3DSA:1.20.1260.10:FF:000002+1-176+Ferritin,_mitochondrial
|
PTHR11431+7-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
7dqp_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
20467.020
|
5.064
|
-4.500
|
26.519
|
11.050
|
48.619
|
51.381
|
12.707
|
13.812
|
45.856
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
377.128
|
28.675
|
42.023
|
52.244
|
170.328
|
1284.242
|
822.253
|
1315.481
|
0.000
|
256.718
|
146.696
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.728
|
0.427
|
1.674
|
2.928
|
-0.632
|
— | — | — |
6.564
|
4.339
|
— | — |
No JSON data available for plots.