Hg_chrom4_TN10mRNA_7652
Organism: Heterodera glycines Gene Locus: chr4:4743219-4745034 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 1.394 | 0.991 | 0.564 | 0.908 | 0.699 | 0.681 | 0.954 | 1.574 | 1.252 | 1.073 | 1.282 | 1.438 | 1.048 | 1.446 | 1.051 | 0.67 | 1.073 | 0.838 | 1.042 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7224
|
— | — |
1.111
|
3.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.770
|
0.344
|
0.012
|
0.512
|
0.126
|
0.037
|
0.086
|
0.112
|
0.111
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002066
|
2.000
|
2.000
|
Hsc_gene_10161.t1;Hsc_gene_10161.t2
|
Hsc_gene_10161.t1;Hsc_gene_10161.t2
|
— | — |
KAI3413702.1 hypothetical protein GPALN_011186 [Globodera pallida]
|
YP_010338738
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR023398+95-316_163-230+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
361-367
|
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
41961.410
|
9.673
|
15.500
|
26.975
|
11.717
|
47.139
|
52.861
|
16.076
|
10.899
|
47.411
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
418.529
|
84.170
|
186.356
|
218.003
|
473.895
|
342.365
|
871.788
|
141.019
|
0.514
|
961.583
|
549.696
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
1.237
|
0.336
|
1.089
|
-0.455
|
1.359
|
-1.393
|
2.774
|
-10.232
|
8.142
|
— | — | — |
No JSON data available for plots.