Hg_chrom4_TN10mRNA_7653
Organism: Heterodera glycines Gene Locus: chr4:4745264-4747879 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.681 | 1.533 | 0.415 | 1.473 | 0.515 | 0.956 | 0.602 | 1.16 | 1.14 | 0.73 | 1.89 | 1.785 | 0.309 | 1.065 | 1.434 | 0.724 | 0.852 | 0.309 | 0.472 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7225
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
26-74
|
0.949
|
43-73
|
0.998
|
— | — |
0.000
|
— | — |
0.191
|
0.181
|
0.153
|
0.636
|
0.153
|
0.335
|
0.467
|
0.046
|
0.509
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008485
|
1.000
|
1.000
|
Hsc_gene_10160.t2
|
Hsc_gene_10160.t1;Hsc_gene_10160.t2
|
— |
P30187.1 Calmodulin-like protein 10 [Arabidopsis thaliana]
|
KAI1719621.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.815|GO:0110165_0.815|GO:0005622_0.770|GO:0005737_0.706|GO:0008150_0.696|GO:0016020_0.675|GO:0043226_0.565|GO:0043229_0.553|GO:0009987_0.550|GO:0003674_0.543
|
IPR002048+100-135_104-132_106-166_136-171_140-168_174-209_177-238_178-206_210-245_214-242+|IPR011992+98-245+|IPR018247+113-125_187-199_223-235+|IPR050145+97-236+
|
SM00054+104-132_140-168_178-206_214-242+
|
PF13499+106-166_177-238+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000336+173-248+HLH_domain-containing_protein|G3DSA:1.10.238.10:FF:000355+85-172+Uncharacterized_calcium-binding_protein_B0563.7
|
PTHR23050+97-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-249
|
1rfj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
27622.660
|
4.284
|
-16.500
|
28.514
|
9.639
|
52.209
|
47.791
|
11.245
|
17.269
|
52.610
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
394.159
|
458.863
|
652.964
|
232.230
|
209.415
|
278.705
|
251.633
|
279.015
|
234.096
|
662.814
|
479.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.279
|
-1.119
|
-1.382
|
— |
0.426
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.