Hg_chrom4_TN10mRNA_7655
Organism: Heterodera glycines Gene Locus: chr4:4753400-4759811 Feature type: polypeptideProtein Sequence
Length: 890
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 0.888 | 0.47 | 0.581 | 0.88 | 1.008 | 0.575 | 0.506 | 1.049 | 1.367 | 0.834 | 1.124 | 1.124 | 1.016 | 1.49 | 1.782 | 1.253 | 0.834 | 0.951 | 0.76 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7227
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
chloroplast
|
KRVK,RSEKERRRNERKQEGK,RRRTTPTGTKTRHKWRNR,KKSDILQLREEQMRRSEK
|
— | — |
4-45
|
0.807
|
1-29
|
0.788
|
0.980
|
7.000
|
7.000
|
0.193
|
0.141
|
0.006
|
0.141
|
0.178
|
0.188
|
0.207
|
0.004
|
0.898
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002067
|
2.000
|
2.000
|
Hsc_gene_10158.t1;Hsc_gene_10158.t2
|
Hsc_gene_10158.t1;Hsc_gene_10158.t2
|
— |
Q9U7D5.2 Muscarinic acetylcholine receptor gar-3 [Caenorhabditis elegans]
|
KAI3418816.1 7 transmembrane receptor (rhodopsin) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0005886|GO:0007186|GO:0016020|GO:0016907
|
GO:0005575_0.957|GO:0110165_0.957|GO:0008150_0.924|GO:0009987_0.912|GO:0065007_0.889|GO:0050789_0.875|GO:0050794_0.851|GO:0007154_0.821|GO:0023052_0.819|GO:0016020_0.808|GO:0050896_0.782|GO:0005886_0.778|GO:0071944_0.778|GO:0051716_0.754|GO:0003674_0.735|GO:0030054_0.733|GO:0007165_0.723|GO:0045202_0.685|GO:0007267_0.682|GO:0032501_0.650|GO:0099536_0.626|GO:0007186_0.612|GO:0005488_0.576|GO:0042221_0.560|GO:0051179_0.557|GO:0006810_0.552|GO:0051234_0.552|GO:0098590_0.551|GO:0060089_0.528|GO:0038023_0.523|GO:1901698_0.510|GO:1901700_0.502
|
IPR000276+215-239_224-845_230-830_248-269_293-315_299-315_386-409_775-799_812-838+|IPR000995+263-273_294-303_313-327_802-820_833-847+|IPR017452+230-830+
|
SM01381+224-845+
|
PF00001+230-830+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24247+211-849+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
58-153;538-771
|
3.000
|
1-57;154-537;772-890
|
6u1n_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
98396.750
|
10.356
|
48.500
|
21.685
|
8.876
|
49.551
|
50.449
|
13.820
|
7.865
|
52.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
744.790
|
715.261
|
1784.046
|
507.691
|
165.513
|
241.791
|
237.713
|
2863.505
|
56.247
|
772.952
|
465.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.090
|
-0.632
|
-1.705
|
-1.647
|
0.560
|
— |
3.470
|
-3.450
|
— | — | — | — | — |