Hg_chrom4_TN10mRNA_7656
Organism: Heterodera glycines Gene Locus: chr4:4759910-4762823 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 0.876 | 1.141 | 0.649 | 0.941 | 0.912 | 0.697 | 1.674 | 0.744 | 1.131 | 0.475 | 0.984 | 2.092 | 0.885 | 1.793 | 1.315 | 0.96 | 0.856 | 0.966 | 0.738 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7228
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
18-38
|
0.990
|
3-62
|
0.998
|
— | — |
0.000
|
— | — |
0.124
|
0.939
|
0.070
|
0.338
|
0.041
|
0.092
|
0.203
|
0.036
|
0.028
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003819
|
2.000
|
1.000
|
Hsc_gene_10157.t1
|
Hsc_gene_10157.t1
|
— |
Q5F4B3.1 Trimethyllysine dioxygenase, mitochondrial [Gallus gallus]
|
KAI3418817.1 Taurine catabolism dioxygenase TauD, TfdA [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0016491|GO:0045329|GO:0050353
|
GO:0003674_0.865|GO:0003824_0.759|GO:0008150_0.722|GO:0005575_0.698|GO:0110165_0.698|GO:0016491_0.665|GO:0016705_0.656|GO:0009987_0.650|GO:0016706_0.650|GO:0051213_0.650|GO:0016020_0.609|GO:0005622_0.599|GO:0008152_0.583|GO:0043226_0.554|GO:0005737_0.552|GO:0044237_0.551|GO:0009058_0.539|GO:0043227_0.520
|
IPR003819+213-456+|IPR012776+103-468+|IPR038492+85-174+|IPR042098+186-470+|IPR050411+169-460+
|
— |
PF02668+213-456+Taurine_catabolism_dioxygenase_TauD,_TfdA_family
|
— |
PTHR10696+169-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
54256.990
|
7.521
|
8.000
|
27.197
|
14.644
|
49.582
|
50.418
|
15.272
|
11.925
|
50.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
979.111
|
918.078
|
729.274
|
658.961
|
683.919
|
581.877
|
1129.271
|
641.067
|
262.300
|
2083.470
|
1302.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.562
|
-0.616
|
— | — |
-0.219
|
0.967
|
— |
0.959
|
-3.067
|
— | — | — | — |
No JSON data available for plots.