Hg_chrom4_TN10mRNA_7662
Organism: Heterodera glycines Gene Locus: chr4:4773937-4776082 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 1.182 | 0.616 | 1.837 | 1.251 | 1.366 | 0.663 | 0.969 | 0.646 | 1.44 | 1.137 | 1.994 | 1.211 | 0.745 | 1.631 | 0.623 | 0.913 | 0.88 | 0.745 | 0.214 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7233
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.906
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
EEKVNGKKKGREG,RKELVDVWKKMRKKTT
|
41-70
|
0.991
|
47-69
|
0.998
|
— | — |
0.000
|
— | — |
0.724
|
0.101
|
0.024
|
0.432
|
0.044
|
0.027
|
0.037
|
0.004
|
0.131
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008489
|
1.000
|
1.000
|
Hsc_gene_10151.t1
|
Hsc_gene_10151.t1
|
— |
Q24143.1 Nuclear hormone receptor HR96 [Drosophila melanogaster]
|
KAI3418820.1 receptor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.913|GO:0005575_0.858|GO:0110165_0.831|GO:0009987_0.811|GO:0003674_0.801|GO:0065007_0.781|GO:0005488_0.776|GO:0050789_0.776|GO:0005622_0.767|GO:0050794_0.759|GO:0043226_0.757|GO:0043229_0.739|GO:0008152_0.693|GO:0043170_0.693|GO:0009058_0.691|GO:0009059_0.685|GO:0044237_0.685|GO:0044249_0.685|GO:0097159_0.679|GO:0019222_0.672|GO:0010467_0.667|GO:0031323_0.666|GO:0060255_0.663|GO:0044238_0.647|GO:0009889_0.637|GO:0010556_0.637|GO:0031326_0.637|GO:0010468_0.627|GO:0003676_0.622|GO:0080090_0.620|GO:0006139_0.617|GO:0016020_0.615|GO:0034654_0.610|GO:0050896_0.607|GO:0090304_0.606|GO:0141187_0.600|GO:0016070_0.596|GO:0032774_0.596|GO:0003677_0.582|GO:0019219_0.578|GO:0006351_0.573|GO:0051252_0.571|GO:0006355_0.565|GO:2001141_0.565|GO:0043565_0.556|GO:0043227_0.553|GO:0051716_0.547|GO:0003690_0.528|GO:1990837_0.528|GO:0032501_0.522|GO:0007154_0.519|GO:0043231_0.518|GO:0023052_0.517|GO:0048518_0.506
|
IPR000536+179-413_207-383_217-387+|IPR001628+15-87_15-91_17-86_18-45_35-50_68-76_76-84+|IPR001723+80-90_218-239_239-255_315-330+|IPR013088+8-121+|IPR035500+175-412_194-412+|IPR050234+11-411+
|
SM00399+15-87+|SM00430+217-387+
|
PF00104+207-383+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+17-86+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24082+11-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-413
|
1kb6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
46810.430
|
9.058
|
23.000
|
28.329
|
7.990
|
48.668
|
51.332
|
17.433
|
10.896
|
46.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
417.989
|
187.954
|
368.885
|
236.618
|
248.370
|
521.578
|
737.078
|
360.776
|
681.557
|
319.561
|
474.702
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
0.195
|
-0.532
|
— |
1.085
|
0.511
|
-0.641
|
1.176
|
— | — | — | — | — |
No JSON data available for plots.