Hg_chrom4_TN10mRNA_7663
Organism: Heterodera glycines Gene Locus: chr4:4776253-4777851 Feature type: polypeptideProtein Sequence
Length: 354
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.427 | 0.985 | 0.822 | 0.195 | 2.542 | 0.942 | 0.874 | 0.141 | 0.816 | 0.802 | 1.969 | 2.825 | 0.628 | 0.869 | 1.557 | 0.969 | 1.065 | 0.514 | 1.304 | 0.083 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7234
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
ARKRPGG,KRRTTEQSSNRTKSK,KRRRRIGTTDGRQTKK,RKMHPELIRGGKAKRRTT,KKEKKKEEEKEKEEKEKEK
|
— | — | — | — |
1-23
|
0.839
|
0.914
|
0.000
|
0.000
|
0.655
|
0.125
|
0.021
|
0.496
|
0.028
|
0.043
|
0.068
|
0.019
|
0.164
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008490
|
1.000
|
1.000
|
Hsc_gene_10150.t1
|
Hsc_gene_10150.t1
|
— | — |
KAI3418821.1 hypothetical protein GPALN_007921 [Globodera pallida]
|
RPD64022
|
0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-354
|
1.000
|
1-37
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
40767.100
|
8.890
|
3.500
|
40.678
|
4.520
|
61.864
|
38.136
|
20.904
|
19.774
|
41.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1273.597
|
284.397
|
405.190
|
586.319
|
2443.401
|
4023.024
|
198.662
|
557.993
|
476.786
|
2027.278
|
1362.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
0.907
|
0.642
|
2.027
|
0.736
|
-4.329
|
-2.956
|
-1.347
|
-2.211
|
— | — | — | — |