Hg_chrom4_TN10mRNA_7664
Organism: Heterodera glycines Gene Locus: chr4:4778125-4783458 Feature type: polypeptideProtein Sequence
Length: 798
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.02 | 0.82 | 0.475 | 2.214 | 1.574 | 0.641 | 1.003 | 0.835 | 0.898 | 0.835 | 1.401 | 1.149 | 1.301 | 1.611 | 1.056 | 0.76 | 0.665 | 1.06 | 0.516 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKKK,KREQQVAYEADDCRNRRP,KKNTMSEQGRQTTKGSRR,RQKKERKEAKEEDKKGTEEMEKLKKSWEKEESQQREKEGREKGREGEEEEEERKRRLGREKK
|
— | — | — | — |
1-33
|
0.972
|
1.000
|
1.000
|
1.000
|
0.182
|
0.029
|
0.009
|
0.337
|
0.156
|
0.423
|
0.253
|
0.023
|
0.797
|
0.215
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008491
|
1.000
|
1.000
|
Hsc_gene_10149.t1
|
Hsc_gene_10149.t1
|
— |
O57460.1 Dorsal-ventral patterning tolloid-like protein 1 [Danio rerio]
|
KAI1729784.1 CUB domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.856|GO:0005575_0.827|GO:0003674_0.811|GO:0110165_0.791|GO:0009987_0.781|GO:0032501_0.560|GO:0005488_0.555|GO:0071944_0.541|GO:0016020_0.529
|
IPR000859+52-174_54-174_65-170_75-170+|IPR001304+179-309_189-309_204-310+|IPR016186+176-317+|IPR016187+175-314+|IPR035914+52-175_65-179+
|
SM00034+179-309+|SM00042+54-174+
|
PF00059+204-310+Lectin_C-type_domain|PF00431+75-170+CUB_domain
|
— |
PTHR24255+35-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
371-798
|
1.000
|
1-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
91601.890
|
4.858
|
-27.000
|
33.208
|
9.273
|
55.764
|
44.236
|
15.414
|
17.794
|
45.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
493.408
|
959.921
|
941.361
|
338.061
|
282.051
|
309.929
|
210.854
|
411.651
|
263.234
|
666.047
|
493.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.258
|
-1.643
|
-1.368
|
-0.292
|
— |
-0.544
|
— |
-0.822
|
— | — | — | — | — |