SCN Proteipedia

Hg_chrom4_TN10mRNA_7669

Organism: Heterodera glycines Gene Locus: chr4:4789587-4794283 Feature type: polypeptide

Protein Sequence

Length: 899

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.802	1.061	1.031	2.416	1.353	1.226	0.914	1.335	0.569	0.857	1.011	0.72	0.865	0.898	1.612	1.001	1.058	0.607	0.685	0.523	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7239	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.951

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RKKR,RRRR,RRHQSRCQFEVAKCRAKKV	—	—	—	—	—	—	0.033	—	—	0.244	0.206	0.008	0.355	0.158	0.112	0.264	0.008	0.191	0.810

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003822	2.000	1.000	Hsc_gene_10148.t1	—	—	P31696.3 Agrin [Gallus gallus]	KAI1729799.1 kazal-type serine protease inhibitor domain-containing protein [Ditylenchus destructor]	No	-0.190

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0003674_0.882\|GO:0008150_0.876\|GO:0005488_0.872\|GO:0065007_0.854\|GO:0050789_0.841\|GO:0005515_0.823\|GO:0032501_0.794\|GO:0005575_0.765\|GO:0110165_0.761\|GO:0009987_0.726\|GO:0050794_0.723\|GO:0032502_0.678\|GO:0048856_0.678\|GO:0007275_0.659\|GO:0016020_0.639\|GO:0048731_0.635\|GO:0007399_0.596\|GO:0016043_0.591\|GO:0071840_0.591\|GO:0071944_0.591\|GO:0005886_0.570\|GO:0050896_0.561\|GO:0005622_0.554\|GO:0051179_0.542\|GO:0051641_0.517\|GO:0007154_0.512\|GO:0030054_0.509\|GO:0023052_0.507\|GO:0008104_0.504\|GO:0033036_0.504\|GO:0034330_0.504\|GO:0070727_0.504	IPR002350+35-71_72-123_76-111_166-223_171-221_326-379_341-379_392-430_392-441_467-530_489-520_559-625_564-623_588-623_630-685_647-685_691-733_700-731_801-865_802-831_802-865+\|IPR036058+70-118_171-221_389-428_491-530_584-624_696-728_792-828+\|IPR050653+74-580+	SM00280+35-71_72-123_171-221_326-379_392-441_467-530_564-623_630-685_691-733_801-865+	PF07648+76-111_171-221_341-379_392-430_489-520_588-623_647-685_700-731_802-831+Kazal-type_serine_protease_inhibitor_domain	—	PTHR10913+74-580+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	213-314;448-497;737-786;895-899	4.000	1-212;315-447;498-736;787-894	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.790	100128.230	7.657	19.000	31.034	8.454	53.838	46.162	17.241	13.793	53.949

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	277.780	205.520	58.460	347.278	476.683	841.142	333.430	218.829	30.281	262.072	162.733

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.046	0.620	2.683	0.425	0.834	-1.325	-2.054	0.753	—	—	—	—	—

No JSON data available for plots.

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