SCN Proteipedia

Hg_chrom4_TN10mRNA_7677

Organism: Heterodera glycines Gene Locus: chr4:4819732-4821305 Feature type: polypeptide

Protein Sequence

Length: 250

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.884	1.116	0.873	0.552	1.0	0.718	0.762	0.6	0.533	1.081	0.909	0.706	1.778	1.154	0.898	2.114	0.918	0.909	1.538	0.588	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7244	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.485	0.323	0.027	0.138	0.710	0.330	0.431	0.011	0.181	0.139

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008495	1.000	1.000	Hsc_gene_10142.t1	Hsc_gene_10142.t1	—	A8XPY4.2 BNIP3 homolog [Caenorhabditis briggsae]	KAI6174745.1 NIP3-like protein [Aphelenchoides fujianensis]	No	0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005740\|GO:0016020\|GO:0043065	GO:0005575_0.946\|GO:0110165_0.946\|GO:0008150_0.937\|GO:0016020_0.899\|GO:0009987_0.885\|GO:0065007_0.857\|GO:0005622_0.847\|GO:0050789_0.840\|GO:0043226_0.832\|GO:0050794_0.820\|GO:0043229_0.817\|GO:0043227_0.810\|GO:0043231_0.810\|GO:0003674_0.804\|GO:0005737_0.777\|GO:0032501_0.765\|GO:0005488_0.751\|GO:0008152_0.738\|GO:0044237_0.734\|GO:0005515_0.731\|GO:0008219_0.686\|GO:0012501_0.685\|GO:0009056_0.683\|GO:0006915_0.682\|GO:0044248_0.678\|GO:0007049_0.677\|GO:0006914_0.676\|GO:0061919_0.676\|GO:0051726_0.675\|GO:0000422_0.670\|GO:0000423_0.670\|GO:0008340_0.670\|GO:0016236_0.670\|GO:0019899_0.667\|GO:0042802_0.662\|GO:0046983_0.655\|GO:0042803_0.654\|GO:0002020_0.650\|GO:0032991_0.616\|GO:0031090_0.607\|GO:0098588_0.572\|GO:0031967_0.567\|GO:0005739_0.556\|GO:0005740_0.549\|GO:0031966_0.549\|GO:0019867_0.547\|GO:0031968_0.547\|GO:0005741_0.540	IPR010548+48-237+	—	—	—	PTHR15186+48-237+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63	1.000	64-250	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.913	27348.550	6.707	0.500	22.400	11.600	50.400	49.600	11.600	10.800	57.600

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	yellow	2323.440	2233.039	2409.868	2024.880	1752.820	2468.010	2126.361	4974.411	2566.894	1493.858	1953.730

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.278	-0.143	-0.240	0.509	-0.206	0.906	-1.085	—	—	—	—	—

No JSON data available for plots.

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