Hg_chrom4_TN10mRNA_7684
Organism: Heterodera glycines Gene Locus: chr4:4839465-4841773 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.58 | 1.114 | 0.98 | 0.757 | 0.832 | 0.972 | 0.927 | 1.198 | 1.286 | 1.403 | 0.938 | 0.939 | 1.552 | 0.806 | 1.222 | 1.226 | 0.982 | 0.877 | 0.461 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7250
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRIQGKCGSDERQQRERIR
|
46-72
|
0.869
|
— | — | — | — |
0.000
|
— | — |
0.399
|
0.237
|
0.031
|
0.643
|
0.111
|
0.411
|
0.217
|
0.071
|
0.386
|
0.162
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003824
|
1.000
|
2.000
|
Hsc_gene_10135.t1;Hsc_gene_10135.t2
|
Hsc_gene_10135.t1;Hsc_gene_10135.t2;Hsc_gene_10136.t1;Hsc_gene_10137.t1
|
— |
G5ECP4.1 Pelle-like serine/threonine-protein kinase pik-1 [Caenorhabditis elegans]
|
KAI1714744.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.817|GO:0110165_0.817|GO:0008150_0.772|GO:0016020_0.736|GO:0009987_0.615|GO:0005622_0.589|GO:0003674_0.568|GO:0071944_0.558|GO:0005886_0.544|GO:0050896_0.542|GO:0065007_0.511
|
IPR000719+185-487_185-499_188-482+|IPR008271+327-339+|IPR011009+167-494+|IPR011029+1-72_8-70+|IPR017441+191-212+|IPR050885+91-494+
|
SM00220+185-487+
|
PF00069+188-482+Protein_kinase_domain
|
— |
PTHR47989+91-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-501
|
9na6_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
56001.990
|
8.770
|
15.000
|
24.950
|
11.577
|
48.104
|
51.896
|
14.571
|
10.379
|
49.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1388.935
|
2482.802
|
1618.538
|
1165.447
|
1058.835
|
1068.260
|
1758.650
|
1403.782
|
1406.891
|
1062.802
|
1210.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.848
|
-1.228
|
-0.364
|
-0.171
|
— |
0.729
|
0.288
|
0.467
|
— | — | — | — | — |
No JSON data available for plots.