Hg_chrom4_TN10mRNA_7685
Organism: Heterodera glycines Gene Locus: chr4:4841916-4846627 Feature type: polypeptideProtein Sequence
Length: 713
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.011 | 1.199 | 0.58 | 0.888 | 0.755 | 0.618 | 1.262 | 1.06 | 1.042 | 1.084 | 1.485 | 1.987 | 1.079 | 1.231 | 1.062 | 0.897 | 0.999 | 1.187 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7251
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KKQPPLVCNDRKDKE,RKWSNAFMVVVPTADKIKR
|
2-22
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.171
|
0.084
|
0.007
|
0.166
|
0.379
|
0.233
|
0.807
|
0.014
|
0.110
|
0.302
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008499
|
1.000
|
1.000
|
Hsc_gene_10134.t2
|
Hsc_gene_10134.t1;Hsc_gene_10134.t2
|
— | — |
KAI1701844.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR004245+28-705_145-606_227-504+|IPR017850+227-509_263-513+
|
— |
PF02995+145-606+Protein_of_unknown_function_(DUF229)
|
G3DSA:3.40.720.10:FF:000017+223-509+Predicted_protein
|
PTHR10974+28-705+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-713
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
81601.260
|
8.652
|
18.000
|
27.630
|
14.446
|
47.826
|
52.174
|
15.708
|
11.921
|
49.088
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
magenta
|
1011.478
|
1406.582
|
865.239
|
922.144
|
1025.965
|
1332.185
|
1154.469
|
1521.326
|
942.745
|
632.692
|
765.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.930
|
-0.746
|
0.201
|
0.122
|
0.391
|
-0.197
|
— |
-0.257
|
— | — | — | — | — |
No JSON data available for plots.