SCN Proteipedia

Hg_chrom4_TN10mRNA_7686

Organism: Heterodera glycines Gene Locus: chr4:4847483-4850129 Feature type: polypeptide

Protein Sequence

Length: 460

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.062	1.011	0.751	1.424	0.725	2.007	0.725	1.522	0.821	0.94	0.494	0.895	1.268	1.254	1.375	1.398	1.14	0.626	0.502	0.639	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7252	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.549

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRHR	—	—	16-51	0.998	—	—	0.000	—	—	0.722	0.130	0.019	0.379	0.034	0.028	0.026	0.084	0.074	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008500	1.000	1.000	Hsc_gene_10133.t1	—	—	—	KAI1709197.1 ATM interactor [Ditylenchus destructor]	No	-0.240

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.958\|GO:0065007_0.921\|GO:0009987_0.910\|GO:0050789_0.910\|GO:0050794_0.902\|GO:0005575_0.892\|GO:0003674_0.888\|GO:0110165_0.875\|GO:0005488_0.870\|GO:0008152_0.840\|GO:0019222_0.840\|GO:0031323_0.840\|GO:0044237_0.840\|GO:0043170_0.832\|GO:0048518_0.830\|GO:0044238_0.828\|GO:0080090_0.828\|GO:0060255_0.827\|GO:0009058_0.819\|GO:0009889_0.816\|GO:0009059_0.815\|GO:0010467_0.815\|GO:0010556_0.815\|GO:0031326_0.815\|GO:0044249_0.815\|GO:0010468_0.814\|GO:0048522_0.814\|GO:0005622_0.809\|GO:0006139_0.804\|GO:0034654_0.804\|GO:0016070_0.798\|GO:0032774_0.798\|GO:0090304_0.798\|GO:0141187_0.798\|GO:0016020_0.795\|GO:0019219_0.793\|GO:0051252_0.793\|GO:0006351_0.788\|GO:0006355_0.780\|GO:0009893_0.780\|GO:0031325_0.780\|GO:2001141_0.780\|GO:0010604_0.774\|GO:0009891_0.770\|GO:0043226_0.769\|GO:0031328_0.762\|GO:0010557_0.761\|GO:0043229_0.755\|GO:0045935_0.754\|GO:0051254_0.752\|GO:0045893_0.737\|GO:1902680_0.737\|GO:0043227_0.731	IPR013087+28-51_30-51_84-117_122-142_122-154+\|IPR036236+100-142+	SM00355+28-51_84-117_122-142+	—	—	PTHR46664+30-150+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	440-460	1.000	1-439	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.886	50603.760	8.194	14.000	21.522	10.435	50.435	49.565	13.043	8.478	55.217

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	423.113	720.801	597.697	399.160	488.716	374.622	988.663	353.417	423.037	62.689	217.124

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.501	-0.990	-0.473	0.261	-0.370	1.412	—	1.629	—	—	—	—	—

No JSON data available for plots.

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