Hg_chrom4_TN10mRNA_7687
Organism: Heterodera glycines Gene Locus: chr4:4850445-4853677 Feature type: polypeptideProtein Sequence
Length: 605
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.23 | 1.112 | 0.57 | 1.157 | 0.72 | 0.689 | 0.909 | 1.139 | 1.184 | 0.701 | 2.042 | 2.204 | 0.922 | 1.585 | 0.897 | 0.596 | 0.676 | 1.78 | 1.264 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7253
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-30
|
0.968
|
1.000
|
0.000
|
0.000
|
0.197
|
0.408
|
0.039
|
0.407
|
0.393
|
0.301
|
0.123
|
0.031
|
0.336
|
0.758
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008501
|
1.000
|
1.000
|
Hsc_gene_10132.t1
|
Hsc_gene_10132.t1
|
— |
P32358.1 Trehalase [Bombyx mori]
|
KAF7639195.1 Trehalase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.852|GO:0003674_0.789|GO:0005575_0.775|GO:0110165_0.775|GO:0008152_0.725|GO:0003824_0.701|GO:0044238_0.648|GO:0009056_0.612|GO:0016787_0.612|GO:0016020_0.595|GO:0016798_0.567|GO:0004553_0.565|GO:0015927_0.559|GO:0005975_0.538|GO:0005984_0.526|GO:0005991_0.526|GO:0005993_0.526|GO:0009311_0.526|GO:0009313_0.526|GO:0016052_0.526|GO:0046352_0.526
|
IPR001661+52-602_90-595_234-252_304-321_338-355_377-394_421-437_492-508_580-593+|IPR008928+75-593+|IPR012341+60-605+
|
— |
PF01204+90-595+Trehalase
|
— |
PTHR23403+52-602+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-605
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
70825.770
|
6.716
|
1.500
|
27.273
|
16.364
|
45.289
|
54.711
|
14.215
|
13.058
|
44.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
401.096
|
51.102
|
862.513
|
680.593
|
204.321
|
46.500
|
33.580
|
306.322
|
155.408
|
818.888
|
534.540
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.846
|
3.597
|
-0.233
|
-1.766
|
-2.121
|
— |
2.617
|
-3.050
|
— | — | — | — | — |