Hg_chrom4_TN10mRNA_7691
Organism: Heterodera glycines Gene Locus: chr4:4862903-4865182 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.175 | 1.207 | 0.795 | 0.565 | 1.002 | 1.191 | 1.073 | 1.23 | 1.093 | 1.329 | 0.994 | 0.482 | 0.759 | 0.893 | 0.948 | 0.898 | 0.985 | 0.994 | 0.631 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7256
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRFDTIGLENTENNRRRYR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.279
|
0.349
|
0.109
|
0.705
|
0.136
|
0.209
|
0.098
|
0.022
|
0.283
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008503
|
1.000
|
1.000
|
Hsc_gene_10129.t1
|
Hsc_gene_10129.t1
|
— |
P46563.1 Fructose-bisphosphate aldolase 2 [Caenorhabditis elegans]
|
AAR09171.1 aldolase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004332|GO:0006096
|
GO:0005575_0.804|GO:0110165_0.797|GO:0008150_0.746|GO:0005622_0.707|GO:0003674_0.701|GO:0005737_0.668|GO:0016020_0.520|GO:0009987_0.501
|
IPR000741+16-366_19-366+|IPR013785+3-365+|IPR029768+225-235+
|
— |
PF00274+19-366+Fructose-bisphosphate_aldolase_class-I
|
G3DSA:3.20.20.70:FF:000140+7-359+Fructose-bisphosphate_aldolase
|
PTHR11627+16-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-366
|
7u5j_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
39566.890
|
8.237
|
7.500
|
24.044
|
8.743
|
46.175
|
53.825
|
13.661
|
10.383
|
53.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
7366.425
|
4973.034
|
8951.159
|
7165.073
|
14393.047
|
11170.391
|
12365.782
|
10873.417
|
1677.005
|
4760.894
|
3439.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
0.390
|
-0.213
|
0.975
|
-0.351
|
0.157
|
— |
0.328
|
-1.606
|
2.225
|
1.781
|
— | — |
No JSON data available for plots.