Hg_chrom4_TN10mRNA_7694
Organism: Heterodera glycines Gene Locus: chr4:4871118-4874989 Feature type: polypeptideProtein Sequence
Length: 633
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.176 | 0.89 | 0.545 | 0.843 | 0.891 | 0.32 | 0.948 | 1.474 | 1.196 | 0.79 | 1.766 | 1.843 | 1.306 | 1.161 | 1.219 | 0.932 | 1.053 | 1.215 | 0.929 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7259
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-23
|
0.732
|
0.853
|
4.000
|
4.000
|
0.058
|
0.055
|
0.016
|
0.168
|
0.245
|
0.136
|
0.222
|
0.009
|
0.714
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008506
|
1.000
|
1.000
|
Hsc_gene_10126.t1
|
Hsc_gene_10125.t1;Hsc_gene_10125.t2;Hsc_gene_10126.t1
|
— |
P09478.2 Acetylcholine receptor subunit alpha-like 1 [Drosophila melanogaster]
|
KAI1717229.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.952|GO:0110165_0.952|GO:0071944_0.895|GO:0008150_0.889|GO:0016020_0.886|GO:0005886_0.871|GO:0009987_0.862|GO:0065007_0.802|GO:0050789_0.762|GO:0051179_0.760|GO:0006810_0.757|GO:0051234_0.757|GO:0023052_0.692|GO:0007154_0.690|GO:0055085_0.689|GO:0050896_0.679|GO:0003674_0.669|GO:0006811_0.653|GO:0034220_0.653|GO:0030054_0.652|GO:0050794_0.639|GO:0007267_0.629|GO:0045202_0.628|GO:0099536_0.628|GO:0007268_0.627|GO:0098916_0.627|GO:0099537_0.627|GO:0032501_0.596|GO:0051716_0.595|GO:0006812_0.581|GO:0098655_0.577|GO:0098590_0.566|GO:0065008_0.564|GO:0005215_0.553|GO:0022857_0.553|GO:0007165_0.547|GO:0005216_0.540|GO:0015075_0.540|GO:0015267_0.540|GO:0022803_0.540|GO:0003008_0.519|GO:0038023_0.518|GO:0060089_0.518|GO:0042391_0.508
|
IPR002394+67-83_101-115_119-131_137-155+|IPR006029+267-594+|IPR006201+41-430_80-96_113-124_157-171_254-266+|IPR006202+33-260+|IPR018000+157-171+|IPR036719+260-602+|IPR036734+21-265_33-259+|IPR038050+266-371_541-614+
|
— |
PF02931+33-260+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+267-594+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000078+266-375+AcetylCholine_Receptor|G3DSA:2.70.170.10:FF:000044+25-265+AcetylCholine_Receptor
|
PTHR18945+41-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
385-540
|
2.000
|
1-384;541-633
|
9dmv_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
72441.630
|
8.441
|
12.000
|
22.749
|
13.270
|
45.498
|
54.502
|
12.796
|
9.953
|
48.815
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
301.449
|
451.917
|
676.437
|
272.876
|
78.453
|
61.602
|
104.760
|
337.586
|
63.624
|
527.261
|
328.560
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.351
|
-0.865
|
-1.200
|
-1.829
|
— |
0.776
|
2.351
|
-1.546
|
— | — | — | — | — |