Hg_chrom4_TN10mRNA_7696
Organism: Heterodera glycines Gene Locus: chr4:4882539-4885606 Feature type: polypeptideProtein Sequence
Length: 543
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 0.857 | 0.77 | 1.08 | 0.952 | 3.305 | 0.745 | 2.762 | 0.818 | 0.846 | 0.502 | 1.083 | 1.279 | 0.992 | 0.977 | 1.394 | 0.876 | 0.502 | 1.133 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7261
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.720
|
0.186
|
0.005
|
0.371
|
0.108
|
0.154
|
0.115
|
0.049
|
0.145
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008508
|
1.000
|
1.000
|
Hsc_gene_10123.t1
|
Hsc_gene_10123.t1
|
— |
A8WFJ9.1 Transcription factor ets-4 [Caenorhabditis elegans]
|
KHN71259.1 DNA-binding protein D-ETS-4 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0006357|GO:0043565
|
GO:0008150_0.939|GO:0065007_0.909|GO:0009987_0.904|GO:0050789_0.903|GO:0050794_0.894|GO:0048518_0.821|GO:0005575_0.794|GO:0008152_0.793|GO:0019222_0.793|GO:0031323_0.793|GO:0044237_0.793|GO:0110165_0.790|GO:0043170_0.786|GO:0048522_0.782|GO:0044238_0.777|GO:0060255_0.773|GO:0080090_0.773|GO:0009058_0.770|GO:0009889_0.770|GO:0009059_0.768|GO:0044249_0.768|GO:0010467_0.765|GO:0031326_0.762|GO:0010556_0.761|GO:0006139_0.757|GO:0010468_0.756|GO:0016070_0.754|GO:0034654_0.754|GO:0090304_0.754|GO:0003674_0.751|GO:0032774_0.748|GO:0141187_0.748|GO:0019219_0.740|GO:0051252_0.740|GO:0005488_0.732|GO:0006351_0.726|GO:2001141_0.726|GO:0006355_0.718|GO:0005622_0.715|GO:0009893_0.704|GO:0031325_0.698|GO:0010604_0.694|GO:0009891_0.685|GO:0010557_0.680|GO:0031328_0.680|GO:0043226_0.675|GO:0045935_0.670|GO:0051254_0.670|GO:0043229_0.669|GO:0016020_0.650|GO:0045893_0.650|GO:1902680_0.650|GO:0097159_0.646|GO:0003676_0.641|GO:0006366_0.606|GO:0006357_0.602|GO:0032501_0.593|GO:0003677_0.591|GO:0043227_0.590|GO:0043231_0.577|GO:0043565_0.566|GO:0003690_0.541|GO:1990837_0.540|GO:0032502_0.534|GO:0048856_0.534|GO:0005634_0.529|GO:0045944_0.510
|
IPR000418+454-542_455-468_455-538_456-538_481-499_500-518_503-518_519-537+|IPR003118+91-175_93-175_95-173+|IPR013761+80-175_89-179+|IPR036388+418-543+|IPR036390+440-540+|IPR046328+233-539+
|
SM00251+93-175+|SM00413+454-542+
|
PF00178+456-538+Ets-domain|PF02198+95-173+Sterile_alpha_motif_(SAM)/Pointed_domain
|
G3DSA:1.10.10.10:FF:000996+452-542+Predicted_protein
|
PTHR11849+233-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;366-444
|
2.000
|
78-365;445-543
|
1yo5_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
61140.560
|
6.776
|
5.000
|
23.573
|
13.444
|
55.249
|
44.751
|
13.628
|
9.945
|
48.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
81.236
|
80.348
|
2.308
|
4.640
|
284.942
|
385.476
|
57.300
|
69.544
|
0.514
|
23.312
|
13.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.341
|
-4.254
|
— |
5.912
|
0.451
|
-2.740
|
-2.573
|
— | — | — |
4.125
|
— | — |
No JSON data available for plots.