Hg_chrom4_TN10mRNA_7698
Organism: Heterodera glycines Gene Locus: chr4:4890489-4891694 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.675 | 0.985 | 1.233 | 0.438 | 1.836 | 1.086 | 0.252 | 0.636 | 0.565 | 1.603 | 1.348 | 1.496 | 1.059 | 0.407 | 1.211 | 0.484 | 0.764 | 0.77 | 0.652 | 0.872 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.581
|
0.282
|
0.029
|
0.626
|
0.049
|
0.098
|
0.126
|
0.014
|
0.142
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008510
|
1.000
|
1.000
|
Hsc_gene_10121.t1
|
Hsc_gene_10121.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.910|GO:0005575_0.871|GO:0110165_0.862|GO:0009987_0.831|GO:0005622_0.756|GO:0003674_0.743|GO:0005488_0.715|GO:0005737_0.682|GO:0065007_0.663|GO:0050789_0.653|GO:0005515_0.650|GO:0051179_0.644|GO:0043226_0.618|GO:0050794_0.610|GO:0016020_0.608|GO:0051641_0.532|GO:0043227_0.507
|
IPR000308+1-236_6-232_39-68_87-111_118-140_151-177_178-204_205-234+|IPR023410+7-236_14-231+|IPR036815+1-236_6-232+
|
SM00101+7-236+
|
PF00244+14-231+14-3-3_protein
|
— |
PTHR18860+6-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
26897.620
|
5.003
|
-5.500
|
33.898
|
8.898
|
50.424
|
49.576
|
16.102
|
17.797
|
44.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
727.454
|
3.277
|
5.227
|
16.430
|
119.010
|
2806.600
|
45.044
|
3306.108
|
0.000
|
819.476
|
468.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.187
|
1.765
|
2.827
|
4.574
|
-5.952
|
— |
-6.050
|
-24.161
|
4.895
|
— | — | — |
No JSON data available for plots.