SCN Proteipedia

Hg_chrom4_TN10mRNA_7701

Organism: Heterodera glycines Gene Locus: chr4:4907171-4911471 Feature type: polypeptide

Protein Sequence

Length: 775

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.735	1.14	1.103	0.801	0.946	1.29	0.676	1.677	1.405	1.046	0.978	1.366	1.577	0.993	1.185	0.995	0.592	1.114	0.298	0.835	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7266	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRS,RKLKDVFGFSYFRFKQK	—	—	23-54	0.909	—	—	0.000	—	—	0.755	0.229	0.019	0.356	0.118	0.080	0.032	0.094	0.125	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008512	1.000	1.000	Hsc_gene_10120.t1	—	—	O18017.2 RecQ-like DNA helicase blm-1 [Caenorhabditis elegans]	KAI1725450.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0004386\|GO:0005524\|GO:0006260\|GO:0006281\|GO:0006310\|GO:0043138	GO:0008150_0.924\|GO:0009987_0.867\|GO:0005575_0.756\|GO:0110165_0.752\|GO:0003674_0.737\|GO:0008152_0.667\|GO:0005622_0.655\|GO:0044238_0.655\|GO:0071840_0.645\|GO:0043170_0.640\|GO:0050896_0.636\|GO:0016043_0.621\|GO:0003824_0.606\|GO:0043226_0.602\|GO:0006139_0.601\|GO:0043229_0.595\|GO:0090304_0.588\|GO:0006996_0.582\|GO:0051716_0.582\|GO:0016020_0.576\|GO:0051276_0.558\|GO:0016787_0.551\|GO:0006950_0.544\|GO:0006259_0.542\|GO:0033554_0.520\|GO:0032392_0.518\|GO:0071103_0.518\|GO:0016462_0.501\|GO:0016817_0.501\|GO:0016818_0.501\|GO:0140640_0.501	IPR001650+429-574_432-534_457-535+\|IPR002464+342-351+\|IPR004589+211-680+\|IPR011545+224-393+\|IPR014001+216-423_228-407+\|IPR018982+625-730_629-742+\|IPR027417+197-414_260-556_415-616+\|IPR032284+547-614+\|IPR036388+626-736+\|IPR036390+626-730+	SM00487+216-423+\|SM00490+457-535+\|SM00956+629-742+	PF00270+224-393+DEAD/DEAH_box_helicase\|PF00271+432-534+Helicase_conserved_C-terminal_domain\|PF09382+625-730+RQC_domain\|PF16124+547-614+RecQ_zinc-binding	G3DSA:3.40.50.300:FF:000296+200-414+ATP-dependent_DNA_helicase_RecQ	PTHR13710+147-718+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	745-775	1.000	1-744	4cgz_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.742	87682.270	7.948	17.000	27.355	12.258	47.871	52.129	15.613	11.742	48.387

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	716.710	550.701	685.621	721.937	712.517	486.941	1314.274	386.522	649.678	826.403	750.663

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.253	0.184	—	-0.534	1.443	-0.441	1.909	—	—	—	—	—

No JSON data available for plots.

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