Hg_chrom4_TN10mRNA_7702
Organism: Heterodera glycines Gene Locus: chr4:4911630-4922844 Feature type: polypeptideProtein Sequence
Length: 2,280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.622 | 0.774 | 1.195 | 1.001 | 1.473 | 0.606 | 1.14 | 1.014 | 1.778 | 0.645 | 1.316 | 1.011 | 0.86 | 1.164 | 1.266 | 0.856 | 0.924 | 0.81 | 0.361 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7267
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRR,RRRK,RRLVTPLRAPKKDGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.369
|
0.115
|
0.026
|
0.496
|
0.290
|
0.428
|
0.398
|
0.039
|
0.281
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008513
|
1.000
|
1.000
|
Hsc_gene_10118.t1
|
Hsc_gene_10118.t1;Hsc_gene_10119.t1
|
— |
Q8C547.3 HEAT repeat-containing protein 5B [Mus musculus]
|
KAI1716041.1 HEAT repeat-containing protein 5A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.875|GO:0110165_0.871|GO:0016020_0.812|GO:0005622_0.797|GO:0043226_0.760|GO:0043229_0.738|GO:0043227_0.713|GO:0005737_0.691|GO:0043231_0.677|GO:0005634_0.545|GO:0005829_0.517
|
IPR011989+109-298_740-1254+|IPR016024+56-1267_384-766_1409-2220+|IPR040108+29-2268+|IPR046837+1394-1585+
|
— |
PF20210+1394-1585+Laa1/Sip1/HEATR5_HEAT_repeat_region
|
— |
PTHR21663+29-2268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1279-1336;2279-2280
|
2.000
|
1-1278;1337-2278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
250424.000
|
7.110
|
19.000
|
22.500
|
8.202
|
45.000
|
55.000
|
12.237
|
10.263
|
50.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
2112.993
|
4962.855
|
2448.685
|
1986.610
|
1886.983
|
1863.959
|
2184.693
|
1800.156
|
1514.177
|
1683.485
|
1610.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.248
|
-1.458
|
-0.193
|
— | — |
0.239
|
— |
0.421
|
— | — | — | — | — |
No JSON data available for plots.