Hg_chrom4_TN10mRNA_7703
Organism: Heterodera glycines Gene Locus: chr4:4922910-4925694 Feature type: polypeptideProtein Sequence
Length: 421
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 0.718 | 0.605 | 1.229 | 0.792 | 0.487 | 0.679 | 1.9 | 1.267 | 1.091 | 0.792 | 1.258 | 1.847 | 1.096 | 0.97 | 1.493 | 0.973 | 0.864 | 1.096 | 0.978 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7268
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
7-57
|
0.987
|
— | — |
0.000
|
— | — |
0.047
|
0.087
|
0.019
|
0.088
|
0.365
|
0.504
|
0.411
|
0.013
|
0.674
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008514
|
1.000
|
1.000
|
Hsc_gene_10116.t1
|
Hsc_gene_10116.t1;Hsc_gene_10117.t1
|
— |
Q22141.2 Post-GPI attachment to proteins factor 2 [Caenorhabditis elegans]
|
KAH7726404.1 Protein Y38F1A.8 [Aphelenchus avenae]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139
|
GO:0008150_0.963|GO:0005575_0.944|GO:0110165_0.942|GO:0009987_0.931|GO:0016020_0.905|GO:0008152_0.751|GO:0044237_0.745|GO:0044238_0.745|GO:0009058_0.737|GO:0043170_0.736|GO:0044249_0.725|GO:0009059_0.718|GO:0019538_0.716|GO:0010467_0.702|GO:0006793_0.693|GO:0006796_0.693|GO:1901135_0.685|GO:0006629_0.683|GO:0044255_0.680|GO:0046486_0.680|GO:0006644_0.679|GO:0006650_0.679|GO:0008610_0.679|GO:0019637_0.679|GO:0008654_0.676|GO:0045017_0.676|GO:0051604_0.676|GO:0090407_0.676|GO:1901137_0.676|GO:0046474_0.675|GO:0046488_0.674|GO:0006661_0.673|GO:0006505_0.670|GO:0006506_0.670|GO:0006643_0.670|GO:0006664_0.670|GO:0009247_0.670|GO:0046467_0.670|GO:0180046_0.670|GO:1903509_0.670|GO:0071944_0.598|GO:0005886_0.585|GO:0005622_0.560|GO:0043226_0.518|GO:0043229_0.516|GO:0051179_0.501
|
IPR019402+175-400+|IPR039545+160-413+
|
— |
PF10277+175-400+Frag1/DRAM/Sfk1_family
|
— |
PTHR12892+160-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-100
|
1.000
|
101-421
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
46739.760
|
8.431
|
16.000
|
21.853
|
15.202
|
43.230
|
56.770
|
13.777
|
8.076
|
52.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
166.846
|
73.579
|
25.704
|
14.306
|
199.058
|
1002.538
|
54.156
|
266.857
|
75.129
|
60.028
|
66.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.748
|
-2.501
|
-0.736
|
3.770
|
2.347
|
-4.202
|
-2.029
|
-2.154
|
— | — | — |
7.928
|
— |
No JSON data available for plots.