Hg_chrom4_TN10mRNA_7704
Organism: Heterodera glycines Gene Locus: chr4:4927091-4929133 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.113 | 1.479 | 0.825 | 0.718 | 1.718 | 0.627 | 0.718 | 0.957 | 0.905 | 0.797 | 1.407 | 1.595 | 0.736 | 1.465 | 1.162 | 0.549 | 1.087 | 1.104 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7269
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.909
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — |
1-36
|
0.878
|
— | — | — | — |
0.000
|
— | — |
0.268
|
0.209
|
0.008
|
0.403
|
0.294
|
0.602
|
0.482
|
0.040
|
0.230
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008515
|
1.000
|
1.000
|
Hsc_gene_10115.t1
|
Hsc_gene_10115.t1
|
— |
H9BW96.1 Ras-related protein rab7 [Epinephelus coioides]
|
KAI3418847.1 Ras- protein Rab-7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.926|GO:0110165_0.926|GO:0005622_0.826|GO:0016020_0.808|GO:0005737_0.778|GO:0043226_0.761|GO:0043229_0.748|GO:0008150_0.737|GO:0043227_0.707|GO:0043231_0.678|GO:0071944_0.676|GO:0009987_0.671|GO:0005886_0.651|GO:0005773_0.644
|
IPR001806+2-209_11-175_12-178+|IPR005225+10-171+|IPR027417+3-189_5-182+
|
SM00173+7-178+|SM00174+12-178+|SM00175+10-178+|SM00176+15-208+
|
PF00071+11-175+Ras_family
|
G3DSA:3.40.50.300:FF:000086+1-193+Ras-related_small_GTPase
|
PTHR47981+1-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-209
|
1.000
|
1-183
|
1vg8_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
23580.600
|
7.167
|
1.500
|
26.316
|
11.005
|
49.282
|
50.718
|
13.876
|
12.440
|
52.153
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkgrey
|
2208.839
|
1636.457
|
2288.754
|
2167.733
|
2363.921
|
2788.412
|
2430.079
|
3869.608
|
1172.837
|
2204.683
|
1762.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.255
|
0.269
|
— | — |
0.253
|
-0.188
|
0.367
|
-0.528
|
— | — | — | — | — |
No JSON data available for plots.